Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0782 ATGGGTGGGATTGGGTTTGAGGACTTGCTGCCCGTGATGGCGAACAAGCTGGGAGGAGAGGGTCTGATGAAGGAGCTCTGCAACGGGTTCGAGCTGCTGGTGGACAAGGACAAAGGAGTCATCACTTTGGAGAGTTTGAGACGCAACGCCGCGCTTCTCGGCCTCCAGGACTTGAAGGAGGACGACCTCACCAGCATGATGACGGAAGGGGACCTTGACGGTGACGGTGCCCTCACTAAGATGGAGTTCTGTGTCTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAGGAGTCATGGTTTTGGCTTGAAGAGGCTCTCCAACACGAACTCAACAATAACAACACCAACACCAACAATCACTCTTCTGTTTAG 372 0.5323 MGGIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKDKGVITLESLRRNAALLGLQDLKEDDLTSMMTEGDLDGDGALTKMEFCVLMFRLSPELMEESWFWLEEALQHELNNNNTNTNNHSSV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0782 123 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Aed5g0782 123 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Aed5g0782 123 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 3 116 - -
Aed5g0782 123 PANTHER CALCIUM-BINDING PROTEIN KIC 3 116 IPR044205 GO:0005509
Aed5g0782 123 Pfam EF-hand domain pair 38 89 IPR002048 GO:0005509
Aed5g0782 123 Gene3D - 4 119 - -
Aed5g0782 123 SUPERFAMILY EF-hand 2 102 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0782 Aed-Chr5 5886730 5887101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0782 6 113 EF-hand Containing Proteins AT5G54490 63.303 5.85e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0782 K24345 - gmx:100527206 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0782 5 5886730 5887101 Aed5g0782 5 5886730 5887101 ECH