Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0780 ATGGAAACAAGATCCGCAAAACGCAAGAAGATGGCTCAAATACTAGAGAACGATGCAAAAGCAGCCACGGATCGGATCAGTGATCTCCCTGATGAAGTTCTTCACCAAATCCTTTTCCTTCTCCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCCAAAAGATGGAAGTTTCTCTGGTCCACTTTTCCCGATCTTGACTTCACAACCCTTAACCCATTTGAAATCTCTTCCAAAAGCTTGAAGCTTTTGGAGTTTGAGAAGCCGAGACAGCCTCTGGATTCATCGCGGATGGATTTCATCACGCAGGTTCTCTCCATTCGCAACAAGCACTCCGACATTAGGGTTCTTTGTTTCCGCGCACGTTTGAGTTTTTCGCGGTTGAATAGTTTGATCCGTAGGGCCATTAGGCACAACGTTAGAGAGATTGACATCGAGGTTTCAACAGTGTGTACAGATGATTACTTCAATTTTCCTAGATGTGTTATCGGGAGTGAAACTTTGAGGGTTTTGAAGCTAAAATCAGGGTTTCGTTTACCTCCTTCATCGGTTATGAGACATGGCTTTCAATCTCTACAAACCCTATCTCTTTCCCTGGTCGTTTTGAACAACCAGCCTTCTCTTCCTGATTTGTTCTCTGAATCTTCTTTCCCTCTTCTTAAGACTCTAAACCTTGATTCGTGTGTCGGGTTGAAATATCTTCATGTTGGGTGTAGGGCTCTTGAAGATTTGAGCTTGGAGAAATGCTATCAGCTAGAGGGTTTGGATATTTGTTGTGCGAAGCTTGAGAGGATGAGATTGGTGAAGTGTTTTGATGCCTATAGTGACAAGAGTACTTGGGTGAAAATCAATGCACGCAAGCTTGAGAATTTGTGTTGGCAACATAATGCAATCACTGACATGACTATTTTTGAGCCTTCAAATTTGTTGAATGAGGTCACCATTGGTTTCTATATATTGACTAGAGATAATACTTCGGGTAAGCTTCAAAGTGCGGTTGATCTTTTGTCTGGACTTTCTAATGCACGTTCTTTGTCTCTTGAAAGACAAACTATCGAGATATACAACCTTCACTCTTACTTTGGCTGCTTGCAGATTCTATCAAATAATCACCTCCTTTTTCAGCCATTTTATAATCTTAAACATTTAGAGCTGCATACTGCTTTCAACAAAAGTAATGTTCCTGGTTTGACATGCCTATTCAAGAGCTCTCCCACTCTCAACACTATGATTCTCAAGATCATTCATGAATATAGGATTGAAAGAAAAGAATGGAATAGAGACTTATGGGACATGACTATCACTGAGGGAGAGCAGTATTGGGAGTCTCAAATCAGAACTCTGGAGTCATTTCTACAACACTTGAAAGTGGTGAAAATTCATAGTTTTCTTGATTATGAGAATGAAGTTGCACTTGCAAAGTTTCTCCTCAAGCATGGGAAGGCCTTAGAAGAAATGGTATTATACGCAGGACATTGCAATGCAAGAGATACTCTTAGGCGACAAAAAATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCATTTCAGTAG 1572 0.4046 METRSAKRKKMAQILENDAKAATDRISDLPDEVLHQILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFTTLNPFEISSKSLKLLEFEKPRQPLDSSRMDFITQVLSIRNKHSDIRVLCFRARLSFSRLNSLIRRAIRHNVREIDIEVSTVCTDDYFNFPRCVIGSETLRVLKLKSGFRLPPSSVMRHGFQSLQTLSLSLVVLNNQPSLPDLFSESSFPLLKTLNLDSCVGLKYLHVGCRALEDLSLEKCYQLEGLDICCAKLERMRLVKCFDAYSDKSTWVKINARKLENLCWQHNAITDMTIFEPSNLLNEVTIGFYILTRDNTSGKLQSAVDLLSGLSNARSLSLERQTIEIYNLHSYFGCLQILSNNHLLFQPFYNLKHLELHTAFNKSNVPGLTCLFKSSPTLNTMILKIIHEYRIERKEWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHSFLDYENEVALAKFLLKHGKALEEMVLYAGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0780 523 SUPERFAMILY RNI-like 158 304 - -
Aed5g0780 523 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Aed5g0780 523 SUPERFAMILY F-box domain 21 73 IPR036047 GO:0005515
Aed5g0780 523 PANTHER F-BOX PROTEIN-LIKE 22 468 - -
Aed5g0780 523 SMART 9598neu4hmm 449 523 IPR006566 -
Aed5g0780 523 Gene3D Ribonuclease Inhibitor 168 500 IPR032675 -
Aed5g0780 523 Gene3D - 6 66 - -
Aed5g0780 523 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 22 468 - -
Aed5g0780 523 Pfam F-box domain 26 61 IPR001810 GO:0005515
Aed5g0780 523 Pfam FBD 449 488 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0780 Aed-Chr5 5867419 5869921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0780 21 472 EF-hand Containing Proteins AT5G41840 23.185 4.79e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0780 - - gmx:100819136 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0780 5 5867419 5869921 Aed5g0780 5 5867419 5869921 ECH