Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0776 ATGTCACTGCTCAAGACGACAACCCTTCTTCCCAAACCTTCTGCCACCACCCTCAGTTCTCTACAATGTGGAACCTTACTCCAATCAATCACCAACTCCAAATCCTTAACCCAAGCCCTGCAACTTCACGCTCACGTCACCACCGGCGGAAACCTCCGCCGCAACACCTACCTCGCAACCAAGCTCGCCGCATGCTACGCCGCCTGCGGCCACATGTCCCATGCCCAACTCATCTTCGACCAAATCATCCTAAAGAACTCGTTTCTCTGGAACTCCATGATCAGGGGCTACGCCTGCAACAAGTCTCCCTCAAGGGCCCTTATTGTCTACCGCGAAATGTTGCGGTTTGGACAAAAGCCCGATAATTTCACCTACCCTTTTGTCCTCAAGGCCTGTGGGGACCTTCTGCTTCGCGAAATGGGCAGAAAGGTTCATGCTTTGGTGGTGGTTGGTGGGTTGGAGGAGGATGTTTATGTGGGCAACTCGATACTCTCGATGTGCTTTAAGTTTGGTGACGTGGAAGCTGCGCGGGTGGTGTTTGATAAAATGCCTTTGAGGGACTTGACTTCTTGGAACACAATGATGTCGGGGCTTGTGAAGAATGGGGAGGCAAGGGGTGCTTTTGAGGTTTTCGGGGACATGAGGAGGGATGGTTTTGTGGGAGATGGAGATGGGACCACCTTGCTTGCACTTCTCTCTGCTTGTGGGGATGTTATGGATTTGAAGCCGGGGAAAGAGATTCATGGTTATGTTGTTAGGAATGGTGGGAATGGGAGAGTGTGTAATGGGTTTTTGATGAATTCAATTATTGACATGTACTGCAATTGTGAGTCTATGTCTTGTGCAAGGAAGTTGTTTGAAGGGTTGAGAGTGAAGGATGTTGTGTCGTGGAATTCATTGATTTCGGGGTATGAGAAGTTCGGGGATGCTTTTGAAGCTCTTGAGCTTTTCGGTCGAATGGTTGTAGGAGGTGCAGTGCCTGATGAGGTGACTGTGATTTCTGTGCTTGGGGCTTGTAATCAAATCTCGGCTTTGCGATTGGGCACAACTGTGCAGTCATATGTTGTTAAGAGGGGTTATGGAGTGAATGTTGCCGTGGGAACGGCACTTATTGGCATGTATGCTAACTGTGGAAGTTTAGTTTGTGCTTGTCGTATGTTTGATGAGATGCCGGAAAAAAATTTGGCTGCTTGTACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGGAGAGAAGCCCTCTCCATTTTTTATGAAATGCTAGGTAAATGTGTGACTCCAGATGAGGGCATTTTCACCGCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTAGATGAGGGTAAAGAGATTTTCTACAAAATGACTGGAGACTATAATGTGGAGCCTAGACCAACTCATTATTCATGTTTAGTGGATCTGCTTGGCAGAGCAGGGTACTTAGATGAAGCATATGCAGTTATAGAGAATATGAAATTGAAACCTAATGAGGATGTGTGGACTGCTCTTCTTTCTGCATGCAGATTACATCGGAATGTCAAGTTAGCAGTGATCTCAGCACAGAAGCTTTTTGAATTGAATCCAGATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAAACGGTGGAAAGATGTTGAAAACGTGAGGGCATTGGTGACAAAAAGGAGATTGAGGAAACCACCTAGTTACAGTTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTTGGGGATACTTCCCATGAACAGTCGGATGATATTTATGACAAATTGAAAGACTTGAATGAGCAGCTGAAGAAAGCTGGATACAAGCCTGACACTAGTTTAGTTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAATACTGGTCCAGGGACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACAGTAATAAATATGATTTCTAAGCTCACGAATCGGGAGATTATCATGCGAGATATTTGTAGGTTTCACCATTTTAGAGATGGCTTATGCTCATGTGGTGGATATTGGTGA 2106 0.453 MSLLKTTTLLPKPSATTLSSLQCGTLLQSITNSKSLTQALQLHAHVTTGGNLRRNTYLATKLAACYAACGHMSHAQLIFDQIILKNSFLWNSMIRGYACNKSPSRALIVYREMLRFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMCFKFGDVEAARVVFDKMPLRDLTSWNTMMSGLVKNGEARGAFEVFGDMRRDGFVGDGDGTTLLALLSACGDVMDLKPGKEIHGYVVRNGGNGRVCNGFLMNSIIDMYCNCESMSCARKLFEGLRVKDVVSWNSLISGYEKFGDAFEALELFGRMVVGGAVPDEVTVISVLGACNQISALRLGTTVQSYVVKRGYGVNVAVGTALIGMYANCGSLVCACRMFDEMPEKNLAACTVMVTGFGIHGRGREALSIFYEMLGKCVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTGDYNVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAEKRWKDVENVRALVTKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYDKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVINMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0776 701 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 101 675 - -
Aed5g0776 701 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 41 100 - -
Aed5g0776 701 Pfam PPR repeat family 292 339 IPR002885 -
Aed5g0776 701 Pfam PPR repeat family 85 132 IPR002885 -
Aed5g0776 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Aed5g0776 701 Gene3D Tetratricopeptide repeat domain 138 256 IPR011990 GO:0005515
Aed5g0776 701 Gene3D Tetratricopeptide repeat domain 344 458 IPR011990 GO:0005515
Aed5g0776 701 Gene3D Tetratricopeptide repeat domain 459 634 IPR011990 GO:0005515
Aed5g0776 701 TIGRFAM PPR: pentatricopeptide repeat domain 89 121 IPR002885 -
Aed5g0776 701 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Aed5g0776 701 TIGRFAM PPR: pentatricopeptide repeat domain 295 329 IPR002885 -
Aed5g0776 701 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Aed5g0776 701 PANTHER - 101 675 - -
Aed5g0776 701 PANTHER - 41 100 - -
Aed5g0776 701 Gene3D Tetratricopeptide repeat domain 8 137 IPR011990 GO:0005515
Aed5g0776 701 Gene3D Tetratricopeptide repeat domain 257 343 IPR011990 GO:0005515
Aed5g0776 701 Pfam E+ motif 578 601 IPR046849 -
Aed5g0776 701 Pfam Pentacotripeptide-repeat region of PRORP 413 508 IPR033443 -
Aed5g0776 701 Pfam DYW family of nucleic acid deaminases 609 701 IPR032867 GO:0008270
Aed5g0776 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Aed5g0776 701 Pfam E motif 511 573 IPR046848 -
Aed5g0776 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Aed5g0776 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Aed5g0776 701 Pfam PPR repeat 161 185 IPR002885 -
Aed5g0776 701 Pfam PPR repeat 190 219 IPR002885 -
Aed5g0776 701 Pfam PPR repeat 368 394 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0776 Aed-Chr5 5836134 5838239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0776 74 701 Glycoside Hydrolase AT3G49170 36.321 3.49e-137 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0776 - - gmx:100817006 1293.49