Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0740 ATGACCAACGCTCACAAGATGCGCGTGGCATTCACCGTCGCCACATTAGCCGCCGCAGCCGCTGTCATCTCCATCTTCTTCGTCGCGCGAAGGCGCAAGCAGAACAAGTCCTCTCCGTGCTATTTACACTCCGAACAGAAACCACAGTGCGCGTTCAAGCGCGTCTTAGCGGACAACTCCTACGCTCCGTTCAAGCACCTCAGCAACGACGAGAATGCTTCGAATCCTCATCCGTATGAGGCGGAGATTACAGCATTGTTGAAAAATCCTCAGCCTGAAATTGAAGTTGGTACTGAGATTGTGGACTTGGAAATGAAGGATTCATATGTTTGGGTTCATACCGAGATGCAGTTAAAGGAACTGGTTGATGTGTTGAGCCAAGAGAGGTTCTTTGCTGTGGACACGGAACAGCATAGCTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACAAGGGAGAAAGACTATTTGGTTGACACAATTTCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATACGTTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTGTCGAAACCACATAAATCACTTGCTTATTTGCTTGAAACTTACTGCGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCCCTAACAGATGCACACTATCTGTTCAGTCATGGCTCAGGCTTTCCATCAATTTCAAATGAAGCCCAGATTCAGAATTTTGTGAGGCAACTGTGCACATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTATTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCGGGTCACTCGGAAATATACAACACCATAGCTCAGGCTGATATCAATATGGAAATGGGTGTCAACTCTCTCATTCCTTCCCCATCTCCTGTTGTTTGCAGTCATCTGAGTGATATCTATCATCTGCTTGCAAACAAGTTGGTTAATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTCTAGGTCAAAATGGAAGTTGTCCACTTTCTATATTTAATTATGCTTTGTTGGTAAGTAGCCTAAGACCTACTTTAGCCTATAAACAACCAGGCCCAAAAAATCCTAAACAATTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTGCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAGGAAGCTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTGTTGATGAAGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGCCCTGAGGACGAAGACAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTACTTGCGGTATCGAATAATCCCATCATGTTACAGAGTACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGACATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCACATGCTGCTGCAGAAAAGTATAAGAGAAAAATAGCTGTTGAATATGGCATTCCTCTCTACCTTCAGAGGGTAGTCCATCCAGGTCAAGAGACTGAAAAACAGATTGAAGAGGAGAGAGGTGTATCTCCATTACAGTTACGAAATGCTGCTATGGCTCTTCTACGCCATGGACCAAGTATGCCCCTCAATCGCCATGAAGAACTGACTGAGATTATAAAGAGATATTATGGAGGAAGGGAGATATCTGAGGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGCTTTGAGAAGAAGAGAGGGTTTTCTTTTAAGCATTCTTTGGGGAGTACTGCTACAGTGCCAGAACTGGATAACCATGCTGGTTGCACACCCAGAATGAGTAATGTGGACACGTTGCAAGTTGGTGCTCATGATGGCTCATATACAAATGAAGAAACAAGTGAAGTAGATAGAGAGATTTTGACGAGAAAAGATGATATTGGAAGCTCCACTTTAGTTTCTGATATTAAAGTTAATGGAGATGTCTCTGCAACTTTGAACAGAAATATGATCACAGTTGAAACTATAGGCTACAATGAAAGCAGTGACTCTGCATTAAATGTTGATGATAGTGGTCTGAGCTGTAGGCAAGAAAATGGGCTTAGTGAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGAAATCGAGTTGTAGAACATTTACTGAAGGAGTATGGTGAGGATGGCATTCGAGAGCTTTGTCAAAGATGGAGACAAGTATTTGTGGACGCTGTAAATCCACGTTTTCTTCCTGGTGGTTGGGATGTGAAACACAGTGGAAGAAGGGACTTCGGGGATTTCAGTGTATACAATCCTGACAACAGAGGAGCTGCTGCTAGTAGAGACTAG 2571 0.4247 MTNAHKMRVAFTVATLAAAAAVISIFFVARRRKQNKSSPCYLHSEQKPQCAFKRVLADNSYAPFKHLSNDENASNPHPYEAEITALLKNPQPEIEVGTEIVDLEMKDSYVWVHTEMQLKELVDVLSQERFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDTISLHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPHKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYALTDAHYLFSHGSGFPSISNEAQIQNFVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQPSAGHSEIYNTIAQADINMEMGVNSLIPSPSPVVCSHLSDIYHLLANKLVNDDDIYSVILQKCLGQNGSCPLSIFNYALLVSSLRPTLAYKQPGPKNPKQFSRKASRDLFVQKFSCKSAVYHNCRIFANDGRLLCYCDRRKLEWYLSRDLAKLVDEEPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEYGIPLYLQRVVHPGQETEKQIEEERGVSPLQLRNAAMALLRHGPSMPLNRHEELTEIIKRYYGGREISEEDLERALQVGMTPHERRRFEKKRGFSFKHSLGSTATVPELDNHAGCTPRMSNVDTLQVGAHDGSYTNEETSEVDREILTRKDDIGSSTLVSDIKVNGDVSATLNRNMITVETIGYNESSDSALNVDDSGLSCRQENGLSEHNSKLSLLGHGPHGNRVVEHLLKEYGEDGIRELCQRWRQVFVDAVNPRFLPGGWDVKHSGRRDFGDFSVYNPDNRGAAASRD 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0740 856 SUPERFAMILY Ribonuclease H-like 47 266 IPR012337 -
Aed5g0740 856 Gene3D - 45 268 IPR036397 GO:0003676
Aed5g0740 856 SUPERFAMILY HRDC-like 282 362 IPR010997 GO:0000166|GO:0044237
Aed5g0740 856 PANTHER PROTEIN RRP6-LIKE 3 2 266 - -
Aed5g0740 856 PANTHER PROTEIN RRP6-LIKE 3 278 849 - -
Aed5g0740 856 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 266 IPR045092 GO:0000175|GO:0000467
Aed5g0740 856 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 278 849 IPR045092 GO:0000175|GO:0000467
Aed5g0740 856 Pfam 3'-5' exonuclease 109 266 IPR002562 GO:0003676|GO:0006139|GO:0008408
Aed5g0740 856 Gene3D HRDC domain 274 372 IPR044876 -
Aed5g0740 856 SMART 35exoneu6 109 280 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0740 Aed-Chr5 5514093 5521239 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0740 K12951 - gmx:100791485 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0740 5 5514093 5521239 Aed5g0740 5 5514093 5521239 ECH