Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0690 ATGGGTGTACCTTCGTTCTATAGATGGCTGGTTAAGAAATATCCCAAGGTCGTGCAAGACGTGGTGGATCCCACCATGCAAGAAGACCCAATTGGTGGATCAGTGAAGTTTGATAACTTCTATCTTGACATGAATTCAATCATCCACCCTTGTTTTCACCCTGATGATCATGACAATATTCCATTCCCTACAACGTTCGAAGATGTGTTCAGGAATGTGGTTGGCTACATTGATCGGCTTGTTGACACTGTTAGGCCTGGGAAGCTCCTTTACATGGCTATTGATGGAGTTGCTCCACGTGCCAAGATGAATCAACAAAGATCAAGGCGCTTTCGAGCCGCTAAGGACAATGAAATTCAAGTAGCTGAGGAAAAGAGGCTGAGGAAACAGTTTGAAATGGAAGGGAAACAAGTTCTTCCTAAACAAAAATCTGATGTGTCAGATTCAAATATCATAACACCTGGCACTGAGTTCATGCATGAACTCTCTAAGGCCCTTAAAATCTATATCTCTTCAAGGATAACCTCTAATCCTTTATGGAAGGATATTATGGTAATTCTCTCTGATGCTAATGCTCCCGGAGAAGGGGAACATAAGATTATTTCATACATAAGGAACCAACGTAGCCTTGAGGGATATGATCCAAACACCAGTCACTGCTTATATGGCTCGGATGCTGATCTCATAATGCTTGCAATGGCAACTCATGAGCCCCATTTTTCAATATTAAGAGAGGATGTCCAGCAGCCCTCAAGAAATGCTGCTAAGTCTTTCAAGTTTTTGCATATTTGGTTATTGAGGGAGTATCTTGAGATAGACATGAAGATAGAAGATCCTCCTAAAAATTGCAGCATCGAGTTTGAGCGGATAATTGATGATTTTGTCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTTCCCCACATGCCAACTTTGGAAATTCACGAGGGGGCTATTGATTTGCTAATGACTATTTACAAGCAAGAATTCAATAAACTTGGAGGATATCTTGTGGACATGAGCAGGATTGGGGAGAAAAATGCTGCTTTTTTGAAGTTATCAAGAGTTGAAAAATTTATACTTGCTGTTGGTGCACATGAAGAGAAAATCTTTAAAAAAAGATCTGAAATACGAGAACGATATCTGCGAAGGCTTATTAGAGAAAATGAGGATGCTAAGCAGGAAGAAAAGAATGCAACATGTTACACTGATCTTGACGATGAAAATACTTCTGATTGTACTCTTCTGATTAAGAAGGAAGATTCAAAAAATTTGTCTGTTTTGGTCAATGGTGTTTCACCTACATGTGCTGAAGTCCAGAAGTACACCGAAGGATTGGTGTGGGTTCTTGAATACTATTTTTCATCAGCTGCTTCGTGGACATGGTTTTATCCATTCCACTATGCTCCATTTGCTTCGGACTTAAAGGGAATGGGTCAGGTGAGACTAGAAGTTGATAAAGGTGCCCCATTTTTACCACTTGATCAACTTTTAAGTGTTCTTCCTCCGGCAAGTTCTCATGCACTTCCAAGAGCCTTTGCCCAATTGATGCTAGACGAGAAATCTAGAATATTTGACTTTTATCCTCAAGATTTTGAAGTTGACATTGAAGGAAAGCGCTTCATGTGGCAGGTTATCTCACTCAACACTGTTTTAGGAATCTGCAAGCTTCAATGGATAGATGATAAGCGGCTTGTGGCTGAAACCAGAGAACTCAAAAATGAATTATCTGAACAAGAGGCCATAAGAAATTCACTCAAAGCTGATAGCTTTGACGGCATTGGGGGTATGATAAGTCTCTGCAATGAGTTCGCTGAGAAGCTTTGCTTGGACATTTGTGACAGCAAAAAAGAAGATAGTGTCTTATGTGTCTATTACGAGCTTCCTGCTGGTAGCATTCACATTCCTCGTTTACTATCGGATGTGAAGCATCCAGAGCAGACAATCGTTGAAGGTGACATTATGGAAACCGAACTCTGGCATGAACGTCAGAAACATTATAGTCGTTTTGAGAGGGAGCAAAATCAAGACAAGTGGAGGAGTGAAAACACAAGCAATAATACTACAAGGTTTTCTTCAAATGCAAGTAACCAACATGCAAGAAGCTTTTCATCAAACGCACCTTCCTTCATTTACAAAGATGCTGGTGTTGGATGGGGTTCAGGTTCAGGCAGAGGGAAAAGAATTGATGCAATGGCAAATGAGAGTGTTCCAAACAACATTAGACCACAGCACTTTGTGGACAACTTTAGCCAACTCAGAATATCAGAGTCTAATAATCATTTTCCTAGGCCTGGTGGTGGCAGTTCTCAGTTTCGACCACAAAATAATGGTTACATGAATCAATCAAGAAATGCTCCTTATCATCATCATCAAGGTAGGGGTGAATCTAGTAACAGTTCATTGCGGCCTCAATGGAGTGGTGGAAAAGCTTACCAAGTGAAAAAAGATAAAAATCGTTGGTAA 2466 0.4031 MGVPSFYRWLVKKYPKVVQDVVDPTMQEDPIGGSVKFDNFYLDMNSIIHPCFHPDDHDNIPFPTTFEDVFRNVVGYIDRLVDTVRPGKLLYMAIDGVAPRAKMNQQRSRRFRAAKDNEIQVAEEKRLRKQFEMEGKQVLPKQKSDVSDSNIITPGTEFMHELSKALKIYISSRITSNPLWKDIMVILSDANAPGEGEHKIISYIRNQRSLEGYDPNTSHCLYGSDADLIMLAMATHEPHFSILREDVQQPSRNAAKSFKFLHIWLLREYLEIDMKIEDPPKNCSIEFERIIDDFVFMCFFAGNDFLPHMPTLEIHEGAIDLLMTIYKQEFNKLGGYLVDMSRIGEKNAAFLKLSRVEKFILAVGAHEEKIFKKRSEIRERYLRRLIRENEDAKQEEKNATCYTDLDDENTSDCTLLIKKEDSKNLSVLVNGVSPTCAEVQKYTEGLVWVLEYYFSSAASWTWFYPFHYAPFASDLKGMGQVRLEVDKGAPFLPLDQLLSVLPPASSHALPRAFAQLMLDEKSRIFDFYPQDFEVDIEGKRFMWQVISLNTVLGICKLQWIDDKRLVAETRELKNELSEQEAIRNSLKADSFDGIGGMISLCNEFAEKLCLDICDSKKEDSVLCVYYELPAGSIHIPRLLSDVKHPEQTIVEGDIMETELWHERQKHYSRFEREQNQDKWRSENTSNNTTRFSSNASNQHARSFSSNAPSFIYKDAGVGWGSGSGRGKRIDAMANESVPNNIRPQHFVDNFSQLRISESNNHFPRPGGGSSQFRPQNNGYMNQSRNAPYHHHQGRGESSNSSLRPQWSGGKAYQVKKDKNRW 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0690 821 Pfam XRN 5'-3' exonuclease N-terminus 1 246 IPR004859 GO:0003676|GO:0004527
Aed5g0690 821 Gene3D - 140 351 - -
Aed5g0690 821 Gene3D - 1 139 - -
Aed5g0690 821 MobiDBLite consensus disorder prediction 671 702 - -
Aed5g0690 821 PIRSF Exonuclease_Xrn2 248 433 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aed5g0690 821 PIRSF Exonuclease_Xrn2 428 592 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aed5g0690 821 PIRSF Exonuclease_Xrn2 1 255 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aed5g0690 821 PIRSF Exonuclease_Xrn2 586 820 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aed5g0690 821 PANTHER OS11G0157000 PROTEIN 1 692 - -
Aed5g0690 821 Gene3D - 483 586 - -
Aed5g0690 821 Coils Coil 378 398 - -
Aed5g0690 821 Coils Coil 569 589 - -
Aed5g0690 821 MobiDBLite consensus disorder prediction 757 821 - -
Aed5g0690 821 PANTHER 5'->3' EXORIBONUCLEASE 1 692 IPR027073 -
Aed5g0690 821 CDD PIN_XRN1-2-like 40 270 - -
Aed5g0690 821 MobiDBLite consensus disorder prediction 757 807 - -
Aed5g0690 821 Pfam Xrn1 helical domain 437 590 IPR041412 -
Aed5g0690 821 Pfam Xrn1 helical domain 285 423 IPR041412 -
Aed5g0690 821 MobiDBLite consensus disorder prediction 680 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0690 Aed-Chr5 5056705 5063814 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0690 - - gsj:114379404 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0690 5 5056705 5063814 Aed5g0690 5 5056705 5063814 ECH