Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0672 ATGGCGATCTTCTACGCTTTGGTGGCCAGAGGCACCGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACCGGCGCCGTCGCCCGCCGCATCATCGAGAAGCTTCCGGCGGAGTCCGATTCCAGGCTCTGCTTCTCTCAGGATCGCTTCATCTTTCACATACTCCGATCCGATGGCATCTCCTACGTCTGTATGGCCAACGACACCTTCGGAAGGAGAGTCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTACAGTAGAGTTGCCAATTATGCACCAGCCTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAGATGGAATTTTTTTCTAGTAATCCGAGTGCCGATACTCTGAATCGTGTGAGGGGTGAAATACGCACTATTATGGTGGACAATATTGAAAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAGACAGCAACAATGCAAGACAGCGCATTCCACTTTAGGAAACAGTCAAAGCGCCTTAGAAGAGCTCTTTGGATGAAAAATTTTAAACTCCTGGCCTTATTGACATGCTTGATTGTTATCATTCTTTATTTGGTAATCGCTGCTTGTTGTGGTGGTATCTCTCTACCGTCCTGCAGATCCTAG 654 0.474 MAIFYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRLCFSQDRFIFHILRSDGISYVCMANDTFGRRVPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLALLTCLIVIILYLVIAACCGGISLPSCRS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0672 217 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Aed5g0672 217 PRINTS Synaptobrevin signature 184 203 IPR001388 GO:0016021|GO:0016192
Aed5g0672 217 PRINTS Synaptobrevin signature 128 147 IPR001388 GO:0016021|GO:0016192
Aed5g0672 217 PRINTS Synaptobrevin signature 148 167 IPR001388 GO:0016021|GO:0016192
Aed5g0672 217 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Aed5g0672 217 Gene3D Longin domain 1 124 - -
Aed5g0672 217 Gene3D - 125 206 - -
Aed5g0672 217 ProSitePatterns Synaptobrevin signature. 141 160 IPR001388 GO:0016021|GO:0016192
Aed5g0672 217 CDD R-SNARE 125 181 - -
Aed5g0672 217 SUPERFAMILY SNARE fusion complex 126 185 - -
Aed5g0672 217 CDD Longin 4 118 IPR010908 -
Aed5g0672 217 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 216 - -
Aed5g0672 217 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 123 183 IPR042855 -
Aed5g0672 217 SMART Longin_2 28 110 IPR010908 -
Aed5g0672 217 PANTHER SNARE PROTEINS 1 216 - -
Aed5g0672 217 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Aed5g0672 217 Pfam Synaptobrevin 133 208 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0672 Aed-Chr5 4933626 4937247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0672 1 217 Miscellaneous Gene Families AT5G22360 83.258 1.11e-138 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0672 K08515 - gmx:100780787 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0672 5 4933626 4937247 Aed5g0672 5 4933626 4937247 ECH