Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0634 ATGGCTCCAGCAAGAGCAAACCATATTGATAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTGGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGGAGTTACTGTCACTAATGATGGTGCTACAATCTTGAAGTCCCTCCATATTGATAACCCGGCTGCTAAAGTCCTTGTCGACATATCAAAAGTACAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTAATGGCTGGTGAACTTTTGAGGGAGGCAGAAAAGCTGGTTGCAACCAAGATTCATCCGATGACAATAATATCAGGTTTTCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGCTGGAGAAGGCTGTGGACAACAAAGCCGATTCTGAGAAATTCAGGTCAGACTTATTGAAAATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGATCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACTAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCGTTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGAATTGGACAACCCAAACGGATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACGGACAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAACAGCTGAGAAAGAGAAAATGAGAGAAAAGGTGCAAAAGATACTAGGTCATGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAACTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTGGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTGAGTCTGTTAAGCTTGGGCATTGCGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGTGCCAGCCACCATGTTCTGGATGAGGCTGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGAGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAGGAAGTCGATGCGTTAGCTAAGAATACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCGTTCTCCCGTGCACTCATGGCTATCCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAATTAATTTCTCAGCTCCGCGCAGAGCATCAGAAGGAGGGCTGTACTGCAGGAATTGATGTTATTTCTGGATCTGTTGGAGACATGGCTGAACGGGGAATATGCGAAGCATTCAAGGTCAAGCAAGCTGTATTGCTATCTTCAACAGAAGCAGCTGAAATGATCCTTAGAGTTGATGAAATCATCACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA 1602 0.4351 MAPARANHIDRIFKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRGVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVMAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLEKAVDNKADSEKFRSDLLKIAMTTLSSKILSQDKDHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLMDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKILGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDALAKNTPGKKSLAIEAFSRALMAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVGDMAERGICEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0634 533 SUPERFAMILY GroEL apical domain-like 212 378 IPR027409 -
Aed5g0634 533 Pfam TCP-1/cpn60 chaperonin family 36 523 IPR002423 GO:0005524
Aed5g0634 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 38 54 IPR017998 GO:0140662
Aed5g0634 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 62 80 IPR017998 GO:0140662
Aed5g0634 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 407 419 IPR017998 GO:0140662
Aed5g0634 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 92 111 IPR017998 GO:0140662
Aed5g0634 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 373 395 IPR017998 GO:0140662
Aed5g0634 533 SUPERFAMILY GroEL equatorial domain-like 19 525 IPR027413 -
Aed5g0634 533 SUPERFAMILY GroEL-intermediate domain like 158 405 IPR027410 -
Aed5g0634 533 ProSitePatterns Chaperonins TCP-1 signature 1. 41 53 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 Gene3D GroEL 217 369 IPR027409 -
Aed5g0634 533 CDD TCP1_beta 12 528 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 ProSitePatterns Chaperonins TCP-1 signature 3. 92 100 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 Gene3D - 148 405 IPR027410 -
Aed5g0634 533 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 12 529 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 PANTHER CHAPERONIN 12 531 IPR017998 GO:0140662
Aed5g0634 533 PANTHER BNAA02G05110D PROTEIN 12 531 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 ProSitePatterns Chaperonins TCP-1 signature 2. 64 80 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Aed5g0634 533 Gene3D - 33 522 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0634 Aed-Chr5 4674138 4680758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0634 206 392 Acyl Lipid Metabolism Gene Families AT4G33240 21.393 4.39e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0634 K09494 - gmx:100797805 992.645