Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0615 ATGTTCCAGAAGGGTTCCGCTTCCCATCTCCACCTTCTCCCTCGTAAGTACTATCAATTCCATCTGCCACGTAACATCGGCGACGGACTCCACCAGCACGCAGACGGCGCAATAGCGAAACTAGTCCTCGAATCGGAGCCAAATACCCTCTCCGAAGCTCTCTCTAATCCCAGAATCCAATGGAGCCCGGAGCTAGTAAACAAGGTCCTGAAGCGCCTCTGGAACCACGGGCCCAAAGCCCTGGAATTCTTCAAACACCTAAACCGGCACCCCTCCTACATCCACTCCCCCTCCTCCTTCGACCACGCCATCGACATCGCGGCCCGCATGCGCGACTTCACCTCCGCATGGGCCTTAGTGGGCCGCATGCGCTCCCTCCGCCTCGGCCCGTCTCCCAAAACCCTCTCCATCCTCGCCGAGCGCTACGCCTCCACCGGAAAACCCCACCGCGCCGTCAGAACGTTCCTCTCAATGCACTACCACGGCGTCCACCAGGACCTAACCTCCTTCAACACCATCCTCGACATCCTCTGCAAGTCTAACCGCGTCGAGGCCGCCCACACCCTTTTCAAAACTCTAAAATCGCGTTTCAGACCCGATGCCGTCACTTACAACACTCTCGCCAACGGCTATTGCTTGATCAAACGCACACCCATGGCGCTGCGGCTTCTGAAGGAGATGGTACAGCGCGGGATCGAGCCCACGTTGGTCACTTACAACACCATGCTGAAAGGCTACTTCAGGAGCGGTCAGTTGAGAGAGGCTTGGGAGTTTTATTTGGAGATTAAGAAGAGGAAGTGCGAGATTGATGTTGTGACTTACACCACTGTGATTCACGGCTTCGGGGTAGCGGGTGAGGTTAAGAAGGCAAGAAGAGTTTTTTATCAGATGGTGAAGGAGGGTGTGGCTCCTAATGTTGCTACTTACAATGCTTTGATTCAGGTTCTGTGTAAGAAGGATAGTGTGGAGAATGCGGTGGTCGTTTTCGAGGAGATGGTGAGGGAGGGTGTTTGTGTGCCCAACTTGGTTACTTACAACGTTGTTATACGGGGTTTGTGTCATGTCGGGGAGATGGAGAGGGCGTTGGGGTTTATGGGGAGGATGGAGGAGGAGCATGGTTTGAGGGCCGGTGTTCAGACTTATAACGTCGTGATTCGCTACTTTTGTGATGCTGGGGAGATTGACCAGAGTTTGGAGGTGTTTGGGAAGATGGGGGATGGGACTTGCTTGCCTAATTTGGACACTTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAGAAATCCGAGGATGTGGTGCTGGCTGGGAAGTTGTTGGTGGAGATGGTTGATAGAGGGTTCTTGCCGCGCAAGTTTACTTTCAATAGGGTTTTGAATGGACTTGTTATTACTGGCAATCAGGATTTTGCACAGGAGATACTCAGAATGCAGAGCAGGTGTGGCCGTGTTGTTCGGAGTTTGAAATTGTGA 1470 0.5259 MFQKGSASHLHLLPRKYYQFHLPRNIGDGLHQHADGAIAKLVLESEPNTLSEALSNPRIQWSPELVNKVLKRLWNHGPKALEFFKHLNRHPSYIHSPSSFDHAIDIAARMRDFTSAWALVGRMRSLRLGPSPKTLSILAERYASTGKPHRAVRTFLSMHYHGVHQDLTSFNTILDILCKSNRVEAAHTLFKTLKSRFRPDAVTYNTLANGYCLIKRTPMALRLLKEMVQRGIEPTLVTYNTMLKGYFRSGQLREAWEFYLEIKKRKCEIDVVTYTTVIHGFGVAGEVKKARRVFYQMVKEGVAPNVATYNALIQVLCKKDSVENAVVVFEEMVREGVCVPNLVTYNVVIRGLCHVGEMERALGFMGRMEEEHGLRAGVQTYNVVIRYFCDAGEIDQSLEVFGKMGDGTCLPNLDTYNVLISAMFVRKKSEDVVLAGKLLVEMVDRGFLPRKFTFNRVLNGLVITGNQDFAQEILRMQSRCGRVVRSLKL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0615 489 Gene3D Tetratricopeptide repeat domain 189 296 IPR011990 GO:0005515
Aed5g0615 489 Gene3D Tetratricopeptide repeat domain 372 488 IPR011990 GO:0005515
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Aed5g0615 489 Gene3D Tetratricopeptide repeat domain 39 184 IPR011990 GO:0005515
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 371 IPR002885 -
Aed5g0615 489 Gene3D Tetratricopeptide repeat domain 297 371 IPR011990 GO:0005515
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 343 371 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 169 196 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Aed5g0615 489 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Aed5g0615 489 Pfam PPR repeat family 378 423 IPR002885 -
Aed5g0615 489 Pfam PPR repeat family 304 354 IPR002885 -
Aed5g0615 489 Pfam PPR repeat family 167 212 IPR002885 -
Aed5g0615 489 Pfam PPR repeat family 234 281 IPR002885 -
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Aed5g0615 489 SUPERFAMILY TPR-like 167 367 IPR011990 GO:0005515
Aed5g0615 489 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 28 489 - -
Aed5g0615 489 PANTHER OS02G0679200 PROTEIN 28 489 - -
Aed5g0615 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0615 Aed-Chr5 4494828 4496297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0615 130 484 Glycosyltransferase AT1G05670 30.337 4.54e-48 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0615 - - gmx:100808784 828.55