Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0598 ATGGCTCCGTTTCCATCAGAGAACGGCGTTGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGACGAAGAAGTGGAAGATGATGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATCCCTTCGCTGCTAGCGAGTGACGCCGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCGCTCGGCACTCACGGCGGCACCGTGCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCAGCACATTCTTCTGTTGTCAACGACCTTAGCCTTGACACAGAAGGTGAATTCATTGGAAGCTGTTCCGATGATGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCAATGAAGGCAGTTGCATTGGATCCGGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTGTATTTAAATTCAAAGAAATGGTTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGCGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAAGACAAATCAACAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATCTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCAGTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAACGATGAGCTTTCTACAGATGCTCTTCCAGTACATGGGTTTGAGCATTACAGGGCGAATGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTGGAATCTGGTCAGGGACGGAGTGAACTAGTTGATGAGGTGGGATCTAGGTATCTTGATCATCTGATTGTGGAAAGAAAATACAGCGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACCTGCCTACAGATAACCCCAGACTACGAGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCTTCGTTTCATAAGGATCTCTTGTCCACTTTAAAATCCTGGCCATCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGGGCAATATGAGAAAGCCTTCTTGTTGTATGCTGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAGGTTGTCCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTTTGTTTATCCAGAATAGGGACTTGATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCCAATGATAAGAGTGATCGTAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTAACTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAAAAAGCCTTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCAGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGAGAGATAGAGATAGCTGGCTCAGTATTCTTTTATTTTGTATACCCGCTCTTTGTCCAGCTGTACTTAACTTGATTCTTGCAATTAACAGGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATCAAGTATTACAAAGAGGCAAGGCATGGAATTTCTTTAGGCAATGAAGAAGATGAGTCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTGTTTGACAAATCTCCAAGTCTGAGAACTGTGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCGTTTTCTATACAGACTGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTAGTAGTAACAAGAAAAAGATCGAAGAAGAAACCTATGATGATTACAATGGTTATGAGGACGGTGCTAGTGATGATGAAGAAGAAACCAAGTTGGGTGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2853 0.4332 MAPFPSENGVEGDDEREEEDEEEDEEVEDDEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHSSVVNDLSLDTEGEFIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIKTNQQKAANGSFRQVPLSGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSSAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELVDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYLPTDNPRLRDTAYEVALVALATNPSFHKDLLSTLKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLFIQNRDLISPPEVVKQLLNANDKSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLTFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMRDRDSWLSILLFCIPALCPAVLNLILAINRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEEDESRVKMSDTRASQVFDKSPSLRTVEVKSKTRGGGRCCICFDPFSIQTVSVIVFFCCHGYHTTCLMDSSYTSSNKKKIEEETYDDYNGYEDGASDDEEETKLGGGPRMRCILCTTAAS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0598 950 MobiDBLite consensus disorder prediction 11 34 - -
Aed5g0598 950 SUPERFAMILY RING/U-box 863 906 - -
Aed5g0598 950 SMART WD40_4 169 205 IPR001680 GO:0005515
Aed5g0598 950 SMART WD40_4 81 120 IPR001680 GO:0005515
Aed5g0598 950 PIRSF Vps41 2 910 IPR016902 GO:0034058|GO:0046907
Aed5g0598 950 Gene3D - 6 278 IPR015943 GO:0005515
Aed5g0598 950 SMART ring_2 869 945 IPR001841 -
Aed5g0598 950 MobiDBLite consensus disorder prediction 1 38 - -
Aed5g0598 950 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 949 - -
Aed5g0598 950 Gene3D Tetratricopeptide repeat domain 540 754 IPR011990 GO:0005515
Aed5g0598 950 Pfam Region in Clathrin and VPS 608 751 IPR000547 GO:0006886|GO:0016192
Aed5g0598 950 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 607 754 IPR000547 GO:0006886|GO:0016192
Aed5g0598 950 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 949 IPR045111 GO:0006623
Aed5g0598 950 SUPERFAMILY WD40 repeat-like 53 246 IPR036322 GO:0005515
Aed5g0598 950 SMART CLH_2 607 754 IPR000547 GO:0006886|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0598 K20184 - gmx:100804340 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0598 5 4354039 4364224 Aed5g0598 5 4354039 4364224 ECH