Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0554 ATGGCCTCAACCAACGCCCTCTCTTCAGCTTCGATTTTGCGCTCTCCCTACCGCCAGTCTCTGGCCCGAAATGTGAACCGCAACGGAAGAGTAAATTACCGGCAACCGAATAGCCGTTTCTCGGTGAAAGCCGCCGCCAAAGAGATTGCGTTCGACCAGCATTCTCGCTCCGCGATGCAGGCCGGCATCGACAAGCTCGCCGATGCAGTTGGGCTCACTCTTGGGCCCAGAGGGAGGAATGTAGTGTTGGATGAGTTTGGAAGTCCTAAAGTGGTTAACGATGGTGTCACCATTGCTCGCGCTATTGAGCTTCCCGATCCTATGGAGAATGCCGGTGCCTCTCTTATTAGAGAGGTTGCTAGTAAGACCAATGACTCTGCGGGTGATGGGACGACCACAGCTTCGGTTCTTGCCCGCGAGATAATTAAGTTGGGGCTTCTTAGTGTGACTTCTGGGGCAAATCCTGTGTCTCTTAAACGAGGGATTGATAAGACTGTGCTGGCTTTGGTGGAGGAGTTGGAGAAGAAGTCCAGGCCTGTCAAAGGTGGAGATGATATCAGGGCTGTTGCTTCCATTTCCGCTGGGAATGATGAGTTGATTGGGCACATGATTGCAGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCGTCGTCATTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCGGAGAAGTTGATTGTTGAATTTGAGAATGCAAGAGTGTTGGTTACAGATCAGAAGATTTCAGCAATAAAAGATATTATTCCACTGTTGGAGAAAACCACTCAATTGAGATCTCCTTTACTTATCGTTGCCGAAGATGTCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAGGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATTTTGACTGGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCATGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTCGGAAAATTACCATCTCCAAGGATTCTACCACGCTCATTGCTGATGCTGCAACAAAGGATGAGTTGCAAGCCAGGGTTGCTCAGTTAAAGAAGGAGCTGTCACAGACAGACTCGGTATATGATACTGAGAAACTGGCTGAGAGGATAGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAACTTGAGGATCGTAAGCTCCGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGTGGAGGTACTGCCCTGGTTCATCTCTCCACTCTTGTCCCAGCAATCAAGGACAAGCTTGACGATGCAGATGAAAAGCTAGGAGCTGACATTGTGCAAAAGGCACTGGTAGCACCTGCGGCATTGATTGCTCAAAATGCGGGAATAGAAGGTGAAGTTGTGGTGGAGAAAATAAAGAGTGGTGAATGGGAGGTCGGTTACAATGCTATGATAGACAAGTATGAGAATTTAGTGGAGGCTGGAGTTATCGACCCTGCCAAGGTAACAAGGTGTGCGTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTGTTGACCACACAGGCCATTGTGGTCGAAAAACCTAAGCCCAAGGTATCTGTAGTTGCCCCACAAGGACTTACTATTTGA 1752 0.484 MASTNALSSASILRSPYRQSLARNVNRNGRVNYRQPNSRFSVKAAAKEIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGASLIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVLALVEELEKKSRPVKGGDDIRAVASISAGNDELIGHMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRSPLLIVAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLHVENTSVEQLGLARKITISKDSTTLIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTLVPAIKDKLDDADEKLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMIDKYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKVSVVAPQGLTI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0554 583 SUPERFAMILY GroEL-intermediate domain like 404 450 IPR027410 -
Aed5g0554 583 PANTHER BNAA04G16190D PROTEIN 1 577 - -
Aed5g0554 583 SUPERFAMILY GroEL equatorial domain-like 55 565 IPR027413 -
Aed5g0554 583 Coils Coil 374 401 - -
Aed5g0554 583 Hamap Chaperonin GroEL [groEL]. 45 581 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 SUPERFAMILY GroEL-intermediate domain like 179 244 IPR027410 -
Aed5g0554 583 Gene3D - 179 452 IPR027410 -
Aed5g0554 583 ProSitePatterns Chaperonins cpn60 signature. 447 458 IPR018370 GO:0005524|GO:0006457
Aed5g0554 583 Gene3D GroEL 234 415 IPR027409 -
Aed5g0554 583 Pfam TCP-1/cpn60 chaperonin family 66 569 IPR002423 GO:0005524
Aed5g0554 583 Gene3D - 49 566 IPR027413 -
Aed5g0554 583 TIGRFAM GroEL: chaperonin GroL 46 570 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 SUPERFAMILY GroEL apical domain-like 226 418 IPR027409 -
Aed5g0554 583 CDD GroEL 47 567 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PRINTS 60kDa chaperonin signature 70 96 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PRINTS 60kDa chaperonin signature 125 152 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PRINTS 60kDa chaperonin signature 440 461 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PRINTS 60kDa chaperonin signature 310 333 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PRINTS 60kDa chaperonin signature 392 417 IPR001844 GO:0042026|GO:0140662
Aed5g0554 583 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0554 Aed-Chr5 4034593 4038298 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0554 - - gmx:100806471 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0554 5 4034593 4038298 Aed5g0554 5 4034593 4038298 ECH