Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0540 ATGGCCGGCAAAGGTGGAGCGACTCCGGCGACATACTCGCCGTCTCCGACAACCGATAAGAAGAAACCACCGTTTTTTAAGGAAGATTGGGTTCGACCCGATGGCCGTGGTTTCCACCAGTGCAGACCCGCGTTTTTCAGGACTGGTGCTGTGAATTCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCTAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATTGGGCGTTTGAATTGCAATGTCAGCCTTACAACGTTTGCAACACCAATTCGTGGGCAGGATTCAGACCATAAAGAGTACAGTGCGATGCTTCATAAAGCTTTGGAGGGTGCAATAATACTGGAAACATACCCCAAGACAACTGTGGACGTTTTTGCATTGGTGTTGGAATCTAGTGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCCTTGCAGATGCTGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGTCATCTTTTAGTAAGAACCTTGTCATTGATCCTATTTTGGAGGAGGAAAACGGCCAAGATGGCAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAGCTCACCGTTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGGTCATGTTTAAAAGAAGCTGCTTCAGATTTCCAGGAATAG 765 0.4627 MAGKGGATPATYSPSPTTDKKKPPFFKEDWVRPDGRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSLTTFATPIRGQDSDHKEYSAMLHKALEGAIILETYPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSSFSKNLVIDPILEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKEAASDFQE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0540 254 SUPERFAMILY Ribonuclease PH domain 2-like 166 251 IPR036345 -
Aed5g0540 254 MobiDBLite consensus disorder prediction 1 26 - -
Aed5g0540 254 CDD RNase_PH_MTR3 41 247 - -
Aed5g0540 254 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 191 IPR020568 -
Aed5g0540 254 Pfam 3' exoribonuclease family, domain 2 168 228 IPR015847 -
Aed5g0540 254 Gene3D - 19 252 IPR027408 -
Aed5g0540 254 PANTHER EXOSOME COMPLEX COMPONENT MTR3 16 249 - -
Aed5g0540 254 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Aed5g0540 254 PANTHER EXOSOME COMPLEX COMPONENT 16 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0540 Aed-Chr5 3909403 3913575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0540 K12587 - gmx:100819105 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0540 5 3909403 3913575 Aed5g0540 5 3909403 3913575 ECH