Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0529 ATGTACAAGAACCAGCTGCAGGAGCTGGCACAGCGGAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGGTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGTCCTCAGTACTGTTCGACGCTCCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCGCTCAATTCCCTCTCCAACCGTGCTCCCTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGGGTGTACAAGAACCTATTGCAGGAAATTGCACAGAGGGTAGGGGCGCCATTGCCACAGTACTTTACATTCAGGTCAGGCTTAGGACATCTTCCTGTTTTTACTGGGACAGTAGAGTTAGCTGGAATCATGTTTACTGGTGAACCTGCCAAGAATAAGAAGCAAGCCGAGAAAAATGCAGCTATGGCAGCATGGTCTTCTCTAAAGCAGTCTTCAACTGAACCAGAAAACAATGACGAACTAGAACAGATCACTATAGCGCGGGCCTTACTGAACTACAGACTGAAGGAAAAGATTTCAATGTCAAATTCAAATGCTCCAGTTCCATTTCCAAAGAAGTTTCAGATTCAAAATCTCAGGCCAACGAGTCCTCAGCCTCTACCTGCTGCTACATCTAAGATTCTTCCCTTAATTTGCCAAAAGGCAGCTGCTCGAAGCAGGCTTCTAGTAGCAGCATCTCCAGCACCAGCTTCCAATGACAATTCTGCAATGCCACAGTTTTCTGCTACACCAGAAAGCCGAGGTATCTGTCGTCCTAAGTTCCCTGCACTCGGAGCAGCACCTTATGTTCCCATAAGACAAATGAGACCATCTTGCCATGGGATGGCACCTCCGGTGACGATAAGGACTGCAATACCTGTATTCTCCCCACCACCACCACCACCAGCTGCGGTGTCCCATCAAGTACTACGAGCTCCTCCTCTACGAGTTGCTCCTCCGGTCACTATTCGGCAAGCTGTTCCGGTATTTGCTGCTCCACCACCACCGGTTCGAAAAGACAAACCTGTTCCCATCCCAAAAGATGAACCTGTTCCCATCCTCCCAAAGACCGATCTACCAACCATTAGTGTCCCTGGCCTGGAAGACAAACTGCCAGCTAAAACTCCAGAAACAGAGACCAAGACCGAGAACATTCCACCTGAATCTGAGACGATGCAGAGCTTGGAGCAGCTAAAAATTTGA 1218 0.5074 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNLRPTSPQPLPAATSKILPLICQKAAARSRLLVAASPAPASNDNSAMPQFSATPESRGICRPKFPALGAAPYVPIRQMRPSCHGMAPPVTIRTAIPVFSPPPPPPAAVSHQVLRAPPLRVAPPVTIRQAVPVFAAPPPPVRKDKPVPIPKDEPVPILPKTDLPTISVPGLEDKLPAKTPETETKTENIPPESETMQSLEQLKI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0529 405 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Aed5g0529 405 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Aed5g0529 405 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Aed5g0529 405 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Aed5g0529 405 Gene3D - 84 155 - -
Aed5g0529 405 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Aed5g0529 405 SMART DRBM_3 88 154 IPR014720 -
Aed5g0529 405 SMART DRBM_3 2 69 IPR014720 -
Aed5g0529 405 MobiDBLite consensus disorder prediction 390 405 - -
Aed5g0529 405 MobiDBLite consensus disorder prediction 338 405 - -
Aed5g0529 405 SUPERFAMILY dsRNA-binding domain-like 88 157 - -
Aed5g0529 405 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Aed5g0529 405 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Aed5g0529 405 Gene3D - 2 83 - -
Aed5g0529 405 PANTHER - 1 405 - -
Aed5g0529 405 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0529 Aed-Chr5 3804277 3808333 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0529 - - gmx:100816445 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0529 5 3804277 3808333 Aed5g0529 5 3804277 3808333 ECH
Aed1g1123 1 11045538 11047804 Aed5g0529 5 3804277 3808333 PCT