LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0511	ATGGGTGGTGGAAGAAAGTGGAGCATCTTGGTGGCCATTTTCATCTTACTTCTTGCTATGGAAGCTGTCATTGCTCAAGGTCAAGGAAATGGCAATGGCAATGACAAGGGTAATGATAATGGCAAGGCTAAGGATAAGGAAGAGAAGGAGAGGGAGAAGAGGGAGAAGGAAAAGGAGAAGAAGGATGAGAAGGAGAAGAAGCAAAAGGAAAAGGAGAAAAAGGAAAAAGAGAAAGAAGCAAAAAAGAAACGTGATGAAGCCACAAACTATGACAAGTTGTCACCTCTTCCAACGGGTCAAGAAAGAGGGTTCTGCAGAAAAAAGACTACCTGTGAGTTTAAGACCATCGTGTGTCCAGCTGAGTGCGGAAACAGGAAGCCTAAGAAGAACAAGCAGAATAAGGCATGTTTCATTGACTGCAGCAGCAGCACATTCGTAGCTACTATAATGTTTATTGATTTTTGTTTTCTTAGGAAAGCCAACTGTGATGGATATGGTGCTTTGTGTTATGATCCTCGCTTTGTGGGTGGTGATGGTGTCATGTTCTACTTCCACGGCGCCAAAGGAGGAAACTTTGCCATTGTCTCTGACGATGAGTTCCAAATCAATGCTCACTTCATTGGTACTCGACCACAAGGAAGGACTCGTGACTACACATGGGTGCAAGCACTTACTGTCATGTTTGACACACACACTCTTGTCATTGCAGCCAATAGAGTATCTCATTGGGATAACAATGTAGATTCCCTCATAGTAAAATGGGATGGTGAACAAATCAACATTCCCACTGATGGAGATGCTGAATGGAGGGCCAATGGTGATGAAAGAGAAGTGGTTGTGGAGAGAACTGACGATACCAACAGTGTGAGAGTCACAATTTCAGGTTTGGTTGAGATGGACATTAGTGTGAAGCCAATTGGAGAGCATGAAAACAAGGTTCACAATTATCAGTTGCCATCAGATGATGCTTTTGCTCATTTGGAGACACAGTTCAGGTTTAAGAAAAGTACTGATAATTTTGAAGGAGTTTTGGGTCAGACTTATAGGCCAGGGTATGTTAGCCCTGTGAAAAGAGGGGTTCCTATGCCAATGATGGGTGGGGAGGACAAGTACCAAACCCTCTCTCTCTTTTCAACATCTTGCAACCAATGTAAGTTCCAGAGGCCATCCGAGATACCAAGCACCAAAGGACTAGTTATTAACTTACTATCATACAACAATGGGATGCATGTATCTATGAAAATGTTACTTGAGAGGTGCACGGTGACTCTGTATACAGGTCGAGGAGGATACAACAATCTCATAATCCACTCTGATAAATTCACCACTAATAGTACTCAGTACTCACTCCTTTCTCGCAATCATAACACTCAAATATTAACTGCATGGTGGTATGCAATGGTTTATGATGAGAATACAATCATGAGAACTAGTCCAAGAACAAGGGACACCCACTTTCCATGCACATTGATTTTCACAGTGCCAGAGGAATCTGGGGATAATGGATCCTTATCAGCTGTAGGAGCCTTTGCTGAAGGTTCTGGTGCCAAAGAGGGTCCCTTTGCAGGTGCCTTGGCAACAGTGAAGAAGTCCATAGGAAGAAGCACTTTCCCAACCTTATAA	1623	0.4307	MGGGRKWSILVAIFILLLAMEAVIAQGQGNGNGNDKGNDNGKAKDKEEKEREKREKEKEKKDEKEKKQKEKEKKEKEKEAKKKRDEATNYDKLSPLPTGQERGFCRKKTTCEFKTIVCPAECGNRKPKKNKQNKACFIDCSSSTFVATIMFIDFCFLRKANCDGYGALCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDEFQINAHFIGTRPQGRTRDYTWVQALTVMFDTHTLVIAANRVSHWDNNVDSLIVKWDGEQINIPTDGDAEWRANGDEREVVVERTDDTNSVRVTISGLVEMDISVKPIGEHENKVHNYQLPSDDAFAHLETQFRFKKSTDNFEGVLGQTYRPGYVSPVKRGVPMPMMGGEDKYQTLSLFSTSCNQCKFQRPSEIPSTKGLVINLLSYNNGMHVSMKMLLERCTVTLYTGRGGYNNLIIHSDKFTTNSTQYSLLSRNHNTQILTAWWYAMVYDENTIMRTSPRTRDTHFPCTLIFTVPEESGDNGSLSAVGAFAEGSGAKEGPFAGALATVKKSIGRSTFPTL	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0511	540	PANTHER	ROOT CAP DOMAIN-CONTAINING PROTEIN	4	392	-	-
	Aed5g0511	540	Pfam	Root cap	330	386	IPR009646	-
	Aed5g0511	540	Coils	Coil	40	93	-	-
	Aed5g0511	540	MobiDBLite	consensus disorder prediction	27	95	-	-
	Aed5g0511	540	MobiDBLite	consensus disorder prediction	38	90	-	-
	Aed5g0511	540	PANTHER	ROOT CAP/LATE EMBRYOGENESIS-LIKE PROTEIN	4	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0511	Aed-Chr5	3683040	3685886	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0511	-		-	gmx:100817164	627.476

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g0511	5	3683040	3685886	Aed5g0511	5	3683040	3685886	ECH