Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0487 ATGAATAGGATCATCACTGCTAGATCCATTTTTTCCGTGGTTTTCAGAAGCAAGTCTCAGCCTCACTCTGCTGCTTTTTCCACCTCCTTGCTCTTCGACGAAACTCAGATACAGTTTAAGGAAAGTGTAGCTCAATTTGCAACGGAACATATTGCCCCTCATGCTTCAAAAATAGATCACACAAATTATCTCCCTAAGGAGGTGAACTTATGGAAAAGCATGGGGGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGGCTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGGATCTGTTGGTCTTTCTTATGGTGCTCATTCAAACCTGTGTATCAATCAGCTGGTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGACCGTGTAGATGGTGGCTATGTACTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTCAAACATTAGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGATTCAGTACCGCCCAAAAATTGGATAAACTTGGGATGCGGGGAAGTGATACGTGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGTTGGATCTGGAGAGACTTGTTTTGGCAGCAGGTCCTCTGGGTATTATGCAGGCATGTCTTGATGTTGCCCTTCCTTACGTTCGACAAAGAGAACAGTTTGGTCGTCCTATTGGGGAGTTTCAGTTTATACAGGGGAAACTTGCTGACATGTATACTTCCTTACAGTCCTCAAGGTCTTATGTGTATTCTGTAGCTCGGGACTGTGACAACGGAAAAGTTGACCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAAGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGTTATGTGAATGAGTATCCTACTGGTCGTTTCTTGAGAGATGCCAAACTCTACGAGATTGGTGCAGGAACTAGTGAGATCAGAAGAATGATTATTGGACGTGAGCTCTTCAAGGAGCAATAA 1233 0.438 MNRIITARSIFSVVFRSKSQPHSAAFSTSLLFDETQIQFKESVAQFATEHIAPHASKIDHTNYLPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVALPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRFLRDAKLYEIGAGTSEIRRMIIGRELFKEQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0487 410 Gene3D - 150 262 IPR046373 GO:0016627
Aed5g0487 410 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 1 410 - -
Aed5g0487 410 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 365 384 IPR006089 GO:0003995
Aed5g0487 410 Gene3D - 263 406 - -
Aed5g0487 410 Pfam Acyl-CoA dehydrogenase, N-terminal domain 34 147 IPR013786 GO:0016627|GO:0050660
Aed5g0487 410 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 26 269 IPR009100 GO:0016627
Aed5g0487 410 Pfam Acyl-CoA dehydrogenase, middle domain 151 246 IPR006091 GO:0016627
Aed5g0487 410 Pfam Acyl-CoA dehydrogenase, C-terminal domain 258 406 IPR009075 GO:0016627
Aed5g0487 410 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 153 165 IPR006089 GO:0003995
Aed5g0487 410 Gene3D - 22 148 IPR037069 GO:0016627|GO:0050660
Aed5g0487 410 PIRSF PIGM 159 410 - -
Aed5g0487 410 PIRSF PIGM 27 123 - -
Aed5g0487 410 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 256 408 IPR036250 GO:0016627
Aed5g0487 410 CDD IVD 32 408 IPR034183 GO:0003995
Aed5g0487 410 PANTHER ACYL-COA DEHYDROGENASE 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0487 Aed-Chr5 3561140 3567938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0487 1 410 Acyl Lipid Metabolism Gene Families AT3G45300 83.415 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0487 K00253 - gmx:100794259 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0487 5 3561140 3567938 Aed5g0487 5 3561140 3567938 ECH