Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0456 ATGAATAGGGCGAGAACTGAAGGCATAACCTTCACGAAGGAACCGTTCATGGAGGATGCAGGGCCTCGCAAGATAAAGAACATGAAGTTCTCCACGTTATCAGAATCGGAAATAAGCAAAATCGGTGAAGTTCAAGTGTGGAAAGGTTCCTACTATGATTCCTTTAAGAAGCCTATCCACGGTGGCTTGTTGGATCCTCGCATGGGCCCTGCTAATAAGAGTCTTGTCTGTGCAACATGCCATGGAAACTTTCATGATTGCCCAGGGCACTATGGATACTCAAACCTTGCTCTTCCTGTTTTCAATGTTGGATATTTAAGTACCATTGTGGAAATACTGAAGTGCATTTGTAAGGGTTGTGCTCGTATTCTCCTTGATGAAGATACCCGTAAAAAGCATTTGAAGAAAATGAGAAGTTCCAAAAAGAGTGAGCTGGATAAGATTGATTTCGTGAAAGTTCGTATAATTAAAGATTGTAGCAAAGTTGTGAATTGCCCAAGATGTGGATATATCAACGGTTCGGTAAAGAAGCTTCCGGCTTCGCTGACAATCATACATGATTGCTCAAAATGTAAAAATAATATTGTTGAAGAGCTTGAGTCCACACTTTCTCGTATAAAAGAGTCTAGGGCGACCACCAATGTGTCTATTCGAATTCTTAATCCTTTCCAAGTTCTTTCCTTGTTTAAAAGAATGCTTGATGAGGACTGTGAATTACTTTATGTTGCTGAAAGACCAGAGAAACTCATAATAACAAACATTGTTGTGCCACCTATAGCTATTAGACCTTCAGTTGTTATGGATGAATCACTGAGCAACGAAAATGACATAACAGAGAGGCTAAAGAACATAATCCAAGCAAATGCTGTTTTGCGCCAGGAATTACAAGAATCAAGTGTTTCATCCAAATTTCTGGATGGTTGGGATATCCTTCAAAATGAAGTTGCTCAATTCATAAATAGTGATGTTCGTGGTGTACCATTCTATATGCAACCGACCAAGCAATTGGCTGGTTTTGTTCAGCGCTTGAAAGGGAAGCATGGACGTTTCCGTGGCAACTTATCTGGTAAACGTGTTGAATATACTGGCAGGACAGTTATTTCACCAGATCCTAATCTGAAGATTTCGGAGGTTGCAATACCCATCCATATGGCTCGTATATTGACTTATCCTGAGCGTGTTACGCCCCACAACATAGAAAAGTTAAGACAATGTGTGAGAAATGGTCCTGATAAGTATCCTGGTGCAAGAATGCTTAGACGTGATGGAGGTCACTCATGGTCCTTAAAAGTTCTTTGTAGGAAGCGTGCTGCTGATGAATTGAGGATTGGTGATATTGTTGATCGCCATTTGGAAGATGGAGATATTGTTCTATTCAATAGACAACCAAGCTTGCATCGGATGTCTATAATGTGTCACAGGGTGCAAAACAATTTGTGCACTCCAAAAAATGGCGAGATTCTGGTTGCTTCTACTCAAGACTTTTTAACCTCTTCTTTTCTCATAACCAGGAAAGATACTTTTTATGACCGTTCTACCTTTTCACTTATTTGCTCATACATAGGTGATGGCATGGATCTTATTGATCTGCCAACTCCTGCAATTGTTAAGCCAGTTGAACTTTGGAGTGGTAAGCAGTTATTTAGCATTATACTGCGCCCACATGCATATATGAGAGTCTATGTGAATCTTACTGTTAAGGAGAAAACATACACTAAGGTTGATGGCAAGAAAAGAGAATTGAAAACATTGTGCCCGAATGATGGGTTTGTTTATTTTCGTAATAGTGAGTTGATCTCTGGACAAGTTGGAAAGGTTACTTTAGGAAATGGCAATAAGGATGGACTGTTCTCTGTGCTACTGAGAGACTATAAATCCCATGCTGCTGCATCTTGCATGAATCGATTAGCTAAATTGAGGAGCTTCACAAAACATATCATTTTACTTGGATACAGTGCACGATGGATCGGCAATCATGGGTTCTCGATAGGCATTGATGATGTCCAACCAAAAGAGATACTGATTAACAAGAAAGATGAAACAATTTCAGAAGGTTATAGGGAATGTGATCAACATATAGAAGCTTTCAATAAAGGAAAATTAGAACTATTAGCTGGTTGTGATGCTGCTCAAACATTAGAGACTCGGATTTCTGGTGTATTAAATGGACTTCGTGAGACGGCAGGGAAGGCAAAAGGCTTTGTTGCTAATTCCTTTTACAGTGGGTTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATATATGTCTCGTCAATTAATGAAATCCCTAGAGGACTTGTTTTTACATTATGATTACACTGTAAGAAATGCTGGTGGTTCTGTTGTTCAATTTTGCTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGAGCGGTTGTTTCTTAAAAGCAAGGCCATATGTCCCAATGATGAAGATGATGAAGTTTTATCTTCCACAGATGTGTGTAAAGTAGTTCATGAGAAGCTCTCAGAATTTGATATATCTAGGTTAGTGGAGAAAGGGGTTTTTGAGGTGGGCTTCTCTGCTGACTTCGTTGAATCTCTACAATCCTTTATCAAAGATAGTACAAAATTAACAGAAGAAGCTTTCATTGATGAAAATTCTCAAAACCTGAAAAAATTTGGGCAGAGGATATCTGGGATCACTCGTAAACAGCTAAATGTTTTTTTGAATGTTTGTCTATCTCATGTTACTCTTGGAGTTCCTCGCGTTAAAGAAATAATGAATGGAAACAAAAAAATCAGTACACCAATTATCACTGCAATTCTTGAGAGAGATGACAATGCAAATACTGCAAGAATTGTAAAAGGTCGAATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATAAAAGTTGTTATGACTTCAAGATCGGCATCAGTTGTTATCACCCTTGACATGAAAATAATACAGGATGCACATCTAAATATAGATGCTAGTACTGTAAAAGAATCAATTTTACAAACTAAAAAGACGAAACTTAAGCCAGAGCATATCAAGGTTTTAGATATTAAAAAGCTTGAAGTTGTTCCCCAAGATGCAGATAGAAGTAAAATCCATTTTCAGCTTCACTATCTCAAAAAATTGCTTCCGACAATTGTAGTGAAGGGCATTAAAACTGTTGATCGAGTTGTTATCAGTAAAGACACCAAGGCTGAAAAGTTCAAATTACTGGTGGAAGGGTGTGAAAGGGCCATGAGGCTGGTGCGGTGCCAACGACTTTGGCCACAGAGGTGGCAGTGGCTTGAAGTTTTCTTCATCATGCCCAGGGTGGAGTATCCTGCAGGGCTAAAAAGAACTTTGACAGAGGACAGTTCTATTGTTGCAAGTATAAGCATGGGTTTTCGAGAGGTTATGGGAGTTGAAGGGATTGATGGACGTAAAACTGTTAGTAATCATATCCACGAAGTGCGGGACACACTGGGAATTGAAGCTGCCAGAGAGAGTATTGTTAAGGAGATAAAGTATACAATGGTGGATACACATGGAATGAATATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGCTACGGGTCATATCCTCGGAATAAATAGATTTGGAATTTCAAAGATGGGTAAAAGTGTATTAATGCTCGCATCATTCGAGAGGACAGCAGATATTCTTTTCCAGGCATCTGTACGTGGGAGGGATGACTCGATTGGTGGAGTAAGTGAATCCATAATCATGGGTATACCAATTCAAATAGGTACTGGAATGATCAAGGTCAAACAAAGGTTGGATCCTCCGGAGTTGCCTCATGGAATCAGTCCTATTCTATCTTGA 3900 0.3933 MNRARTEGITFTKEPFMEDAGPRKIKNMKFSTLSESEISKIGEVQVWKGSYYDSFKKPIHGGLLDPRMGPANKSLVCATCHGNFHDCPGHYGYSNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDCSKCKNNIVEELESTLSRIKESRATTNVSIRILNPFQVLSLFKRMLDEDCELLYVAERPEKLIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGWDILQNEVAQFINSDVRGVPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTPHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDLIDLPTPAIVKPVELWSGKQLFSIILRPHAYMRVYVNLTVKEKTYTKVDGKKRELKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVLLRDYKSHAAASCMNRLAKLRSFTKHIILLGYSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDQHIEAFNKGKLELLAGCDAAQTLETRISGVLNGLRETAGKAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSVVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEVLSSTDVCKVVHEKLSEFDISRLVEKGVFEVGFSADFVESLQSFIKDSTKLTEEAFIDENSQNLKKFGQRISGITRKQLNVFLNVCLSHVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRSASVVITLDMKIIQDAHLNIDASTVKESILQTKKTKLKPEHIKVLDIKKLEVVPQDADRSKIHFQLHYLKKLLPTIVVKGIKTVDRVVISKDTKAEKFKLLVEGCERAMRLVRCQRLWPQRWQWLEVFFIMPRVEYPAGLKRTLTEDSSIVASISMGFREVMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADVMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGMIKVKQRLDPPELPHGISPILS 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0456 1299 Gene3D - 359 481 - -
Aed5g0456 1299 Gene3D - 781 832 - -
Aed5g0456 1299 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 731 - -
Aed5g0456 1299 CDD RNAP_III_RPC1_N 33 792 IPR035697 -
Aed5g0456 1299 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 730 1285 - -
Aed5g0456 1299 Gene3D - 666 728 IPR038120 -
Aed5g0456 1299 Gene3D RNA polymerase II, clamp domain 15 140 IPR044893 -
Aed5g0456 1299 Pfam RNA polymerase Rpb1, domain 3 478 668 IPR007066 GO:0003677|GO:0003899|GO:0006351
Aed5g0456 1299 PANTHER DNA-DIRECTED RNA POLYMERASE 730 1285 IPR045867 GO:0003899|GO:0006351
Aed5g0456 1299 Pfam RNA polymerase Rpb1, domain 5 742 1233 IPR007081 GO:0003677|GO:0003899|GO:0006351
Aed5g0456 1299 SMART rpolaneu7 247 503 IPR006592 GO:0003677|GO:0003899|GO:0006351
Aed5g0456 1299 PANTHER DNA-DIRECTED RNA POLYMERASE 12 731 IPR045867 GO:0003899|GO:0006351
Aed5g0456 1299 Gene3D - 1234 1279 - -
Aed5g0456 1299 Pfam RNA polymerase Rpb1, domain 2 356 476 IPR000722 GO:0003677|GO:0003899|GO:0006351
Aed5g0456 1299 Gene3D - 729 780 - -
Aed5g0456 1299 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Aed5g0456 1299 Gene3D RNA polymerase Rpb1, domain 3 482 665 IPR042102 -
Aed5g0456 1299 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0456 Aed-Chr5 3243928 3263428 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0456 K03018 - twl:119991609 1438.71