Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0439 ATGATCTATCGTAGAGCCAAAACGATTAATACAAATCCATTGCTCTATTATGCCAATAACCGATCCCTATTCCACACCCACAAACCTCGACCCCATGAAAAACCAACTCCAAAAAAGTTTCGAAAGTCCATTCCTTTCGTGACCGAAGTAAAAACAGTGGAAGACCCACAAGAAGCCTTGTCCCTCTTTCAGCGTTACAAAGAACAGGGTTTCCGGCACTATTACCCTTCCTATGCCGCATTGCTCTACAAACTAGCTCGTTCTAGAAAGTTCGAAGCCGTTGAAGCCATTCTCGCTCACATGAAAGACACCGATATGCAATGCAGAGAGAGCGTCTTCATTGCTCTCTTTCAACATTGCAATCCCGATAAAGCCGTTGAGCTCTTCAACAGAATGCCTCAGTTCAACTGCAGCCGCACGATACAGTCTTTCAACTCGCTTCTCAATGTTCTAGTTGACAACGACAGGTTTGACGAGGCCAATGATGTTTTCGGACGATCCTATAAAATGGGTTTTCGTCCAAACACCGTCACGTTCAATATAATGGTGAAGGGTTGGTTGGCGAAGGGCGAGTGGGTGAATGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTTGTCACTTACAATAGTCTCATTGGGTTTCTGTGTAGGAGGGGTGATTTGGATAAGGCAATGGACTTGCTCGAGGACATGGGCCAGAAGGGAAAGCTTGCAAATGAAGTAACTTATGCATTGTTGATGGAGGGTTTGTGCTCTGTTGAGAAGTATGAGGAAGCTAAGAAGCTAATGTTTGACATGGCGTATCGCGGGTGTAAACCTCAGCAGGTGAATTTTGGTGTTTTGATGAACGATCTTGGGAAGAGAGGAAAGGTTGAAGAGGCCAAATCTTTGTTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACGTACAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAGTGGAAGCTTACAAAGTCTTACTTGAGATGCAGATAGGAGGACGTGAGCCGAATGCGGCTACATACAGGATGGTGGTTGATGGTTTGTGCCAGATTGGGGATTTTGAGATTGGTTTAAGTGTTTTGAATGCAATGCTTACTTGTAGACATTGTCCACGTCCTGAAACATTTAATTGTCTGGTTGTTGGCCTGTTGAAAACTGGGAATATTGATGGTGCCTTCTTTGTTTTGGAAGAGATAGAGAAGAGAAAGGTTGAATTTGATTTGGAGAGCTGGGAAACTATAATAAAGGCTGTGACTGCCTGTAGTGAGGATAAGGGTGCAAGTGAGCTCATGACTCTACTTACATCTCCCTGTATCTAA 1359 0.4378 MIYRRAKTINTNPLLYYANNRSLFHTHKPRPHEKPTPKKFRKSIPFVTEVKTVEDPQEALSLFQRYKEQGFRHYYPSYAALLYKLARSRKFEAVEAILAHMKDTDMQCRESVFIALFQHCNPDKAVELFNRMPQFNCSRTIQSFNSLLNVLVDNDRFDEANDVFGRSYKMGFRPNTVTFNIMVKGWLAKGEWVNACEVFDEMLQKRVQPSVVTYNSLIGFLCRRGDLDKAMDLLEDMGQKGKLANEVTYALLMEGLCSVEKYEEAKKLMFDMAYRGCKPQQVNFGVLMNDLGKRGKVEEAKSLFHEMKKRRLKPDVVTYNILINYLCKEGKAVEAYKVLLEMQIGGREPNAATYRMVVDGLCQIGDFEIGLSVLNAMLTCRHCPRPETFNCLVVGLLKTGNIDGAFFVLEEIEKRKVEFDLESWETIIKAVTACSEDKGASELMTLLTSPCI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Aed5g0439 452 Pfam PPR repeat 388 416 IPR002885 -
Aed5g0439 452 Pfam PPR repeat 114 137 IPR002885 -
Aed5g0439 452 Pfam PPR repeat 284 311 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Aed5g0439 452 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 447 - -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 353 384 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 285 316 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 388 420 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 212 241 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Aed5g0439 452 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Aed5g0439 452 Pfam PPR repeat family 209 258 IPR002885 -
Aed5g0439 452 Pfam PPR repeat family 141 185 IPR002885 -
Aed5g0439 452 Pfam PPR repeat family 314 363 IPR002885 -
Aed5g0439 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Aed5g0439 452 PANTHER OS05G0548600 PROTEIN 26 447 - -
Aed5g0439 452 Gene3D Tetratricopeptide repeat domain 300 450 IPR011990 GO:0005515
Aed5g0439 452 Gene3D Tetratricopeptide repeat domain 119 275 IPR011990 GO:0005515
Aed5g0439 452 Gene3D Tetratricopeptide repeat domain 52 118 IPR011990 GO:0005515
Aed5g0439 452 SUPERFAMILY TPR-like 153 338 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0439 Aed-Chr5 3102004 3103362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0439 125 444 Glycosyltransferase AT1G05670 29.063 4.65e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0439 - - gmx:100776556 808.135