Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0410 ATGGCATCGCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCGGGTTTGGTCGACGAAACCAATATTTTTGAATGGAGTGTCACCATAATTGGACCGCCCGACACTCTCTATGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGCTATGGCACCCTAATGTATATCCCGATGGCCGGGTTTGCATATCGATTCTTCATCCTCCTGGTGATGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCCAATGATGAATCTCCAGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGATAGGAGAGACGATTTCAAGAAAAAAGTTAGCCGATGCGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4511 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0410 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Aed5g0410 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Aed5g0410 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Aed5g0410 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Aed5g0410 166 SMART ubc_7 7 164 - -
Aed5g0410 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Aed5g0410 166 CDD UBCc 17 159 IPR000608 -
Aed5g0410 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Aed5g0410 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0410 Aed-Chr5 2916341 2921432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0410 11 131 Miscellaneous Gene Families AT3G17000 32.308 9.37e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0410 K10575 - gmx:100305813 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0410 5 2916341 2921432 Aed5g0410 5 2916341 2921432 ECH
Aed1g1208 1 11666760 11670687 Aed5g0410 5 2916341 2921432 PCT