Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0383 ATGATTTTTTCAAGGATTGCGCGCTCCGTTTCGCGCTCGGCTCGTTCTAGAAATTTACTGCACAGTGATGGGAGAGTGGGAACCCATATCGGAGTGCCACGGACGAATGCGTATTCCGACGGAGCCAAAGGGGTATTAGGGTTTGTTAGAGGCTATGTGTCTTCTGCCAGAGCTCGCAGCAATGCCTTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTCCAGCGAAGCCCCAAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAGGGAAACGACAAAAAATATGAGTCCCAAGATAACTCGAATGCCAACACAGAGGATCATGGAAATTTTCAGGAAGCTTTCATGAAGCAACTTCAAAATGTAATCACCCCAATATTGGTGATGGCGACATTTCTTGCCTTTTCGTTTGGTCCTCGTGAACAGCAGCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATGTTGTTGTCTCAAATAAATCAGTTGCTAAAGTATATGTTAGGGACTCTCCCCACAACCAAACAGATAATGAAGTAGTCCAAGGGACCCTACCTGCAAAGGGATCTGGAGGCCAGTATAAATATTATTTCAATATTGGAAGTGTTGAGTCGTTTGAGGAGAAGCTAGAAGAAGCGCAAGAAGCTCTAGGCATTGATTCTCACGATTTTGTGCCTGTAACATATTCTTCTGAAATGGTTTGGTACCAGGAATTAATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGTGGCAGTGGCGGCGGTAAGGGTGCTCGTGGAATATTCAACATTGGAAAAGCCCATGTTACTAAGGTTGACAAAAATGCCAAAAACAAGATCTATTTTAAAGATGTTGCTGGTTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTTCTCAAGAACCCAAAGAAATATGAAGAACTCGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTCGGTCCTCCAGGAACAGGAAAAACCCTTTTAGCAAAAGCTACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCACCTAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGGCGTGGCGGTTTTTCTGGGGCAAATGATGAACGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGAGTTGTTGTGTTGGCAGGAACAAATAGGCCTGATATCTTAGACAAAGCTCTTCTTAGGCCTGGGAGATTTGACCGCCAAATAACAATTGACAAACCTGATATTAAAGGGCGTGACCAGATATTTCAGATCTACTTGAAGAAAATCAAACTTGATCATGAGCCTTCATATTATTCTCAAAGGCTTGCAGCCCTTACACCGGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAAGTGAAGGAACACAAGTCACAATGGATGATTTTGAGGCAGCCATTGATAGGATCATTGGTGGTTTAGAAAAGAGGAACAAGGTTATAAGCAAGCTGGAAAGGCGGACTGTTGCTTACCATGAATCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCCGAGCCCTTGTTGAAAGTAACTATTGTTCCACGTGGCACTGCAGCTCTTGGGTTTGCTCAATATGTTCCCAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACTCTTGGTGGTCGGGCTGCTGAGCAGGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACTTATGCCCAAGTAGCAGTTTATGGTTTTAGCGATAAGGTGGGCCTCCTCTCCTTCCCTCCAAATGAGGGCCAATTTGAGCTGTCCAAACCATACAGCAGCAAAACTGCCGCAATCATTGATAATGAAGTGCGTGATTGGGTGAAGGAAGCGTATAAACGTACAGTTCAGCTTATTGAGGAACACAAGGAGCAAGTTGCTCAGATTGCTGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGAGGATTTGCTCCGAGTTTTGGGCGAGCGGCCGTTCAAGGCTAGTGAACCCACCAACTATGATAGATTTAAGCAAGGTTTTATAGAGGAAGAGGAAAAGATCGCAGAAACCACTACCGTAGATACGCAGCCTGAGGAAGGTGGCGGGCCTTCACCTTTAGAGCCCCAGGTTGTTCCCACATAG 2439 0.4416 MIFSRIARSVSRSARSRNLLHSDGRVGTHIGVPRTNAYSDGAKGVLGFVRGYVSSARARSNAFVSNLPDFKSVAANPRIRRLFSSEAPKKKNYENFYPKEKKEVPKGNDKKYESQDNSNANTEDHGNFQEAFMKQLQNVITPILVMATFLAFSFGPREQQQISFQEFKNKLLEPGLVDHVVVSNKSVAKVYVRDSPHNQTDNEVVQGTLPAKGSGGQYKYYFNIGSVESFEEKLEEAQEALGIDSHDFVPVTYSSEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGSGGGKGARGIFNIGKAHVTKVDKNAKNKIYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARSEGTQVTMDDFEAAIDRIIGGLEKRNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPNEGQFELSKPYSSKTAAIIDNEVRDWVKEAYKRTVQLIEEHKEQVAQIAELLLEKEVLHQEDLLRVLGERPFKASEPTNYDRFKQGFIEEEEKIAETTTVDTQPEEGGGPSPLEPQVVPT 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0383 812 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 28 811 - -
Aed5g0383 812 CDD AAA 356 493 - -
Aed5g0383 812 SUPERFAMILY FtsH protease domain-like 576 766 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed5g0383 812 Pfam ATPase family associated with various cellular activities (AAA) 360 492 IPR003959 GO:0005524|GO:0016887
Aed5g0383 812 Pfam AAA+ lid domain 522 561 IPR041569 -
Aed5g0383 812 MobiDBLite consensus disorder prediction 98 118 - -
Aed5g0383 812 Pfam FtsH Extracellular 142 246 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Aed5g0383 812 Gene3D - 147 258 - -
Aed5g0383 812 SMART AAA_5 355 495 IPR003593 -
Aed5g0383 812 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Aed5g0383 812 Gene3D - 303 492 IPR027417 -
Aed5g0383 812 MobiDBLite consensus disorder prediction 783 812 - -
Aed5g0383 812 Gene3D - 494 570 - -
Aed5g0383 812 MobiDBLite consensus disorder prediction 98 124 - -
Aed5g0383 812 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed5g0383 812 PANTHER ATP-DEPENDENT PROTEASE 28 811 - -
Aed5g0383 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 566 IPR027417 -
Aed5g0383 812 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 259 759 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed5g0383 812 Gene3D Peptidase M41 576 777 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed5g0383 812 Pfam Peptidase family M41 576 757 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0383 Aed-Chr5 2740452 2745695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0383 1 812 Miscellaneous Gene Families AT2G29080 75.761 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0383 K08956 - gmx:100806656 1390.56