Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0380 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGGTGTTGCTCCGTGAGCAACGCAGACAAGAAGCTGATGATCATGAGCGAGAGCTTAATATTTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGGTGCTGCTCCTGCCACTGGTGCTACTGCTGCCTTTTTGGAGTTTCGAGGGACTAAGGATGTGAATGGGATTGCTTCTGAGGAAGAGCTTAGGTCTGACCCAGCATATCTTTCATATTACTACTCCAATGTGAATTTGAATCCTAGGTTGCCACCTCCTTTGCTCTCAAAGGAGAATTGGAGGTTTCAACAAAGACTTAAAGGTGGAGCTTCAGCTCTAGGTGGAATTGGAGATAGGAGGAAAGTTAACAGGACTGATGATAATGGTGGAAGGTCGCTTTTTTCTACCCCACCGGGCTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAACAAACAAGAGGTTCGGACGAGTGGGGTGGTGATGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAAAAGAGCTTTGCAGAAATTTTTCAGAATTTGCAGAAGCTCTTCCTGCTCAGTTTTCTCTCTACATCCCTTCTTTTTTCTGACTTTTGGTTCATGTTATCTCCAAGAAATTCATTCCCAGATTCAGTTCATGATGCTGCACCAGTTACACTTTCTCAGTCAATTTCAATCAAGCTTGAACAAGATGATTTGGGGCATAATACCGCTATCAGACGCCTTCCTTCTCGTCCAGCCAGTCGTAATGGATTCGACAACAATGATATCATTAGTTCTGCTGAAGCAGAGATAGCTCATGTACGCCACGAGTCCACACCCACTGATGCGCTCAGGTCGGGATCAAATGTTCAAGGATCGTCTGCAGCCCATAATGTTGGCCAACCAGCTTCATATTCTTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCAGATCCACAAATTGTTGCTAGGGCTCCCAGTCCCTGCATCACACCTATTGGTGGTGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCTGGCTCTGATGCATTGAACGGTGTTTCAGCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAATCATTTGCCATCACAGGTTGAATCTGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTAGCCAAGATCATGGGAAGCAACATGGATATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGCAGGAGTGGGTCAGATTTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTAGTGTTCCTTCCAATAACTCATATTTCAAAGGATTGCCTAACTCCCATTTTAGTAGAGGAGGAAGTATGCCACCTCAGTACCTGCCTTTAGATGGTACAAATTCATCATTTAGTAACTATGGTCTGAGTGGCTATGCTGGAAATCCAGCATTGGCATCTTTGATGACTAACCAAATTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTGGAATGGACTCGAGAATTCTTGGTGGTGGTTTGGCTTCTGGAGCTGCTGCTACATCTGATGTGCACAATCTTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCATTTGTCGATCCCATGTATCTTCAGTACCTGAGGACATCTGAGTTTGCTGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTGGACAGGGGCTACTTAGGCAATTCATACATGAATTTACTTGAGCTTCAAAAAGCTTATCTTGGGTCAGTCCTCCCACCTCAGAAATCCCAATACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCAACTCCTCATGGTTATTATGGAAATCCTGGATATGGTGTTGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACTTCTCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTGGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATTTAGATACTGGGAACATTGATGAAAATTTTACTTCTTCTTTGTTGGAAGAGTTTAAAAGCAATAAAACAAAATGTTTTGAGCTCTCTGAAATCGCTGGTCATGTTGTCGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTGCAAAAGTTTTTTGAGCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCATCTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCGTATGGTTGCCGGGTGATACAGAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATTTTAGGGGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCACGAGCGATCTTCTATAATAAAGGAACTAGCAGGCAACATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTACTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAACACATTGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCTCCTCAACCTGCTTAG 3315 0.4386 MLSELGRRPMLGSNEGSFGDELEKEIGVLLREQRRQEADDHERELNIFRSGSAPPTVEGSLSAVGGLFGGGAAPATGATAAFLEFRGTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKENWRFQQRLKGGASALGGIGDRRKVNRTDDNGGRSLFSTPPGFNMRKQESEVDNEQTRGSDEWGGDDGLIGLPGLGLSKQKSFAEIFQNLQKLFLLSFLSTSLLFSDFWFMLSPRNSFPDSVHDAAPVTLSQSISIKLEQDDLGHNTAIRRLPSRPASRNGFDNNDIISSAEAEIAHVRHESTPTDALRSGSNVQGSSAAHNVGQPASYSYAAAVGSSLSRSTTPDPQIVARAPSPCITPIGGGRAIASDKRAIAGSDALNGVSAGINESADLVAALSVMNLSADDVLDGENHLPSQVESDVDNHQRYLFGRQGSQDHGKQHGYLKKSESAHLQNSSKSSRSGSDFNNPSLDRQVELQKSSVPSNNSYFKGLPNSHFSRGGSMPPQYLPLDGTNSSFSNYGLSGYAGNPALASLMTNQIGTGNLPPLFENVAAASAMAAPGMDSRILGGGLASGAAATSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPSVDRGYLGNSYMNLLELQKAYLGSVLPPQKSQYNVPLGGKSGSSTPHGYYGNPGYGVGLSYPGSPMANSVVSTSPVGSGSPVRHNELNMRLASGMRNLAGVMGPWHLDTGNIDENFTSSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIIFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGNIVQMSQQKFASNVVEKCLTFGGPSERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPPQPA 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0380 1104 CDD Pumilio 764 1084 IPR033712 GO:0003723
Aed5g0380 1104 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 264 1096 - -
Aed5g0380 1104 Pfam Nucleic acid binding protein NABP 359 767 IPR012940 -
Aed5g0380 1104 MobiDBLite consensus disorder prediction 439 513 - -
Aed5g0380 1104 MobiDBLite consensus disorder prediction 312 329 - -
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 1021 1062 IPR001313 GO:0003723
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 840 875 IPR001313 GO:0003723
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 985 1020 IPR001313 GO:0003723
Aed5g0380 1104 SUPERFAMILY ARM repeat 750 1085 IPR016024 -
Aed5g0380 1104 MobiDBLite consensus disorder prediction 455 500 - -
Aed5g0380 1104 Gene3D - 748 1094 IPR011989 -
Aed5g0380 1104 MobiDBLite consensus disorder prediction 175 189 - -
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 949 984 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 916 951 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 955 986 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 808 841 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 1035 1064 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 887 910 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 772 806 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 844 877 IPR001313 GO:0003723
Aed5g0380 1104 Pfam Pumilio-family RNA binding repeat 989 1023 IPR001313 GO:0003723
Aed5g0380 1104 PANTHER PUMILIO HOMOLOG 1-RELATED 264 1096 - -
Aed5g0380 1104 PANTHER PUMILIO HOMOLOG 1-RELATED 36 216 - -
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 912 948 IPR001313 GO:0003723
Aed5g0380 1104 MobiDBLite consensus disorder prediction 308 329 - -
Aed5g0380 1104 SMART pum_5 985 1020 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 876 911 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 804 839 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 949 984 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 912 948 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 768 803 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 1027 1062 IPR001313 GO:0003723
Aed5g0380 1104 SMART pum_5 840 875 IPR001313 GO:0003723
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 839 IPR001313 GO:0003723
Aed5g0380 1104 MobiDBLite consensus disorder prediction 142 192 - -
Aed5g0380 1104 ProSiteProfiles Pumilio RNA-binding repeat profile. 876 911 IPR001313 GO:0003723
Aed5g0380 1104 MobiDBLite consensus disorder prediction 158 172 - -
Aed5g0380 1104 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 748 1088 IPR033133 GO:0003723
Aed5g0380 1104 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0380 Aed-Chr5 2710549 2718963 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0380 K17943 - gmx:100787039 1840.85