Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0375 ATGCATGGTCTCCTGAGAAACACAACATTGCTCAGGATTCCCGCGACAAATGGCCGTCGGTTTTTCCGATCAGAACCCAAAACCTATGCTGAAGTTGTTGATATATACGCACGCGATCGAGCGTTGCACGGTGGCAGGAAGCTTCACGCGCACCTAATCACCAACGGTTTCGCTCGTTTCAACGTGGTTGCTTCTAACCTCGTATCCTTGTACGCGTGCTGTGGCCAACTCTCCCACGCTCGGAAACTGTTCGACAAAATTCCCGCGACTAATGTTCGGCGCTGGATCGCTCTAATTGGCTCCTGCGCTCGCTGCGGCTTCTACAATCACGCTCTCGCCGTGTTTTCTGAGATGCAAGCCGTTCAAGGGCTTACGCCCAACTACGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGCCACGTCGGGGATCGAATCACCGGAGAGAAAATACATGGCTTCATTTTGAAGTGTTCGTTCGAACTCGATTCTTTTGTGTCCAGTTCTTTGATTGTTATGTACTCCAAGTGTGCGAAAGTTGAGGATGCCCGCAAGGTGTTTGATGGGATGACTGTGAAAGACACGGTGGCTCTAAATGCTGTTGTTGCTGGGTATGTTCAACAGGGTGCTGCAAATGAGGCACTGGGTTTGGTGGAAAGGATGGAGTTGATGGGTTTGAAGCCAAATGTGGTAACTTGGAACTCTTTGATATTTGGGTTTTCGCTGAAAGGTGACCAAGGAATGGTGTCTGAGATTTTTAGCTTGATGATTGCAGATGGGGTGGAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCAGAATTTTCGTAATAAGGAAGCATTTGATGCGTTTAAGCAAATGTTGAGTTTTGGGTTCTGCCCAACTTCGGCTACCATAAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAGTGTTGGGAGAGAGATTCATGGATACGCTTTGGTGACTGGGGTGGAGGGAGATATATATGTAAGGAGTGCCCTGGTTGACATGTATGCAAAATGTGGATTCATTTCTGAAGCGAGGAATTTGTTTAGTAGGATGCCAGAGAAGAACACAGTTACGTGGAACTCTATCATTTTTGGTTTTGCGAATCACGGGTATTGTGAGGAAGCTATTGAGCTCTTCAATCAGATGGAGAAGCAAGGAGCAGCCAAGCTGGATCATCTAACTTTCACGGCAGCTCTCACTGCATGCAGTCACGTTGGAGATATTGAACTTGGGCAGAGGCTGTTCAAGATTATGCAAGAAAAACACAGTATTGAACCGCGGCTAGAGCATTATGCATGCATGGTGGATCTTCTTGGTCGAGCAGGGAAACTCGATGAAGCTTATAGCATGATCAACACAATGCCTATTGAACCTGATTTATTTGTGTGGGGTGCATTACTGGCTGCTTGTAGAAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTATGCATCTGATGGAATTAGAGCCTGAGAGTGCTGCAAACCGTCTTCTGCTGTCCAGCGTATATGCCGGTGCTGGCAAATGGGGAAAGGTTGAGAGGATCAAGAAAAGAATAAAGAAGGGAAAACTAAGAAAACTTCAAGGTTTGAGTTGGATAGATAATTTATAA 1644 0.4678 MHGLLRNTTLLRIPATNGRRFFRSEPKTYAEVVDIYARDRALHGGRKLHAHLITNGFARFNVVASNLVSLYACCGQLSHARKLFDKIPATNVRRWIALIGSCARCGFYNHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVALNAVVAGYVQQGAANEALGLVERMELMGLKPNVVTWNSLIFGFSLKGDQGMVSEIFSLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDAFKQMLSFGFCPTSATISTLLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKQGAAKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKHSIEPRLEHYACMVDLLGRAGKLDEAYSMINTMPIEPDLFVWGALLAACRNHGHVELAEVAAMHLMELEPESAANRLLLSSVYAGAGKWGKVERIKKRIKKGKLRKLQGLSWIDNL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0375 547 PANTHER OS03G0271300 PROTEIN 193 240 - -
Aed5g0375 547 Pfam E motif 483 545 IPR046848 -
Aed5g0375 547 Pfam PPR repeat family 193 240 IPR002885 -
Aed5g0375 547 Pfam PPR repeat family 263 311 IPR002885 -
Aed5g0375 547 Pfam PPR repeat family 364 413 IPR002885 -
Aed5g0375 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Aed5g0375 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Aed5g0375 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 193 240 - -
Aed5g0375 547 Pfam PPR repeat 95 119 IPR002885 -
Aed5g0375 547 Pfam PPR repeat 168 191 IPR002885 -
Aed5g0375 547 Pfam PPR repeat 441 464 IPR002885 -
Aed5g0375 547 Pfam PPR repeat 65 87 IPR002885 -
Aed5g0375 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 192 - -
Aed5g0375 547 Gene3D Tetratricopeptide repeat domain 159 258 IPR011990 GO:0005515
Aed5g0375 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Aed5g0375 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 364 IPR002885 -
Aed5g0375 547 PANTHER OS03G0271300 PROTEIN 42 119 - -
Aed5g0375 547 PANTHER OS03G0271300 PROTEIN 241 546 - -
Aed5g0375 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Aed5g0375 547 TIGRFAM PPR: pentatricopeptide repeat domain 97 127 IPR002885 -
Aed5g0375 547 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Aed5g0375 547 TIGRFAM PPR: pentatricopeptide repeat domain 367 396 IPR002885 -
Aed5g0375 547 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Aed5g0375 547 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Aed5g0375 547 Gene3D Tetratricopeptide repeat domain 280 398 IPR011990 GO:0005515
Aed5g0375 547 Gene3D Tetratricopeptide repeat domain 399 546 IPR011990 GO:0005515
Aed5g0375 547 Gene3D Tetratricopeptide repeat domain 18 146 IPR011990 GO:0005515
Aed5g0375 547 PANTHER OS03G0271300 PROTEIN 89 192 - -
Aed5g0375 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 119 - -
Aed5g0375 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 241 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0375 Aed-Chr5 2660853 2662496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0375 75 545 Glycoside Hydrolase AT3G49170 32.742 7.07e-88 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0375 - - gmx:100790576 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0375 5 2660853 2662496 Aed5g0375 5 2660853 2662496 ECH