LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0355	ATGCGTGAGTACAATATCTACCAATCTCAAACCGAGGAAAATAACGATGTGAAATATCTTCGACCGCAAATAAATAGCAGTATATACTCATTCGATTTCCGAATTTGCCATAATCAACCACAGGCGAAGAAGTCACAATCGTCGTCGCGACTCGCGAGCGAAGAAGTTACGAAGTGCAATAGCTCAAACGACGTGGTTTATTTGTGGTTTTCGAAATTCGATCGCAGCAGAATGGGGATTTTAGGAGCGATTCTGAAACATCCAGATGACTTTTACCCTCTGCTGAAGCTGAAAATGGCGGCAAGAAACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGTTCTTCTGCTACACAATGCTCCATAAGGTTTCTCGAAGTTTCGCACTCGTCATTCAGCAACTCGGTACCGAGCTTCGCAACGCCGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATACTGATAGCTTTTCACCATCATGTTTATGATCGTGATTGGCACTTTGCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTCCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGGACTATCAGGAAGCAATTGAGGACATTACCAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTACGATGAGTATTGTCACTATGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTTTTCCATGCCTCTGGTTCAGAAGACCTGGCTACAGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATTATTCGAGATTATCTAGAAGACATCAACGAGATCCCCAAGTCACGCATGTTTTGGCCACGACAAATTTGGAGTAAATATGTTAACAAACTTGAGGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCGTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATAGCTTAAAATACATGGCTGCTTTACAAGACGTGTCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTATATATTGAAGTCCAAGGTTGACAAAAATGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGGTATACAGAAAACATGCAGAGAATCTGGTCTCTTGAGTAAAAGATTCTCATACTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTTCTAATCAGCAGAATAACTAGTCAAGTAGAAACTAGTCTTGCCTTTCCGAACATGGATGGCATGCCTCATTCCATGGATTGTGAATTTGCGTGCATGCAGCTGAGTATCGTGTATTGTAATTGA	1530	0.419	MREYNIYQSQTEENNDVKYLRPQINSSIYSFDFRICHNQPQAKKSQSSSRLASEEVTKCNSSNDVVYLWFSKFDRSRMGILGAILKHPDDFYPLLKLKMAARNAEKQIPPEPHWFFCYTMLHKVSRSFALVIQQLGTELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHHHVYDRDWHFACGTKEYKVLMDQFHHVSTAFLELGKDYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLATDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKYEENSVKAVQCVNDMVTNALMHAEDSLKYMAALQDVSIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFAYILKSKVDKNDPNATKTLSRLEGIQKTCRESGLLSKRFSYWSSWFPSFLLICLLISRITSQVETSLAFPNMDGMPHSMDCEFACMQLSIVYCN	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0355	509	ProSitePatterns	Squalene and phytoene synthases signature 1.	245	260	IPR019845	GO:0016765
	Aed5g0355	509	Gene3D	Farnesyl Diphosphate Synthase	111	447	IPR008949	-
	Aed5g0355	509	SFLD	Squalene/Phytoene Synthase Like	116	402	IPR002060	GO:0009058
	Aed5g0355	509	CDD	Trans_IPPS_HH	116	397	IPR033904	GO:0004311
	Aed5g0355	509	SUPERFAMILY	Terpenoid synthases	116	444	IPR008949	-
	Aed5g0355	509	ProSitePatterns	Squalene and phytoene synthases signature 2.	278	306	IPR019845	GO:0016765
	Aed5g0355	509	Pfam	Squalene/phytoene synthase	122	392	IPR002060	GO:0009058
	Aed5g0355	509	TIGRFAM	squal_synth: farnesyl-diphosphate farnesyltransferase	113	444	IPR006449	GO:0004310\|GO:0008610
	Aed5g0355	509	PANTHER	SQUALENE SYNTHASE-LIKE ISOFORM X1	78	458	-	-
	Aed5g0355	509	SFLD	Isoprenoid Synthase Type I	116	402	-	-
	Aed5g0355	509	PANTHER	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	78	458	IPR044844	GO:0004311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0355	K00801		-	gmx:547940	728.398

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g0355	5	2477270	2485266	Aed5g0355	5	2477270	2485266	ECH