Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0350 ATGAGGTTGTTCCACATTGCGGCGGTGTTACACGCAGTGTTGATTGTTGGATTGGGGAGGAGCAGCAGCCACGACTACGGAGACGCATTGTCGAAGGCCATAATTTTCTTCGAGGGACAGCGATCGGGATTCCTTCCAGAAGATCAGAGAGTGAGTTGGCGAGGGAAGTCGGGTCTGAGCGACGGGTGGAACTACAAAACGGATCTCACCGGCGGCTACTACGACGCCGGCGACAATGTCAAATTCGGGTTTCCGATGGCCTTCACCACCACAATGCTCGCCTGGAGCGTGCTCGAGTTTGGAGACCTCATGCCTCCCAATGAACTCAGGAACGCACTCGTCGCAATTCGTTGGGTCACCGATTATTTGCTCAAGACTGTTTCTCAGCCCAATCGGATTTTCGTTCAGGTGGGTGATCCAAACTCAGATCATGATTGTTGGGAGAGGCCAGAGGACATGGATACAGCCAGGACTACATATGCTGTTGATGCACCAAACGCGGCTTCTGATGTTGCCGGTGAAACAGCCGCCGCACTGGCCGCCGCATCCATGGCATTCCGATCATCGGACCCGGGATACTCAGAGACATTGCTTCGAAATGCTATTACTGCCTTCAAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGACAATGTCAAGTATAATGCCTGTCCATATTACTGTGATTTTGATGGCTATCAGGATGAGTTGTTATGGGGAGCCGCATGGCTAAGGAGGGCCACGCAGGACGATAGTTTCCTCAACTACATTCAAACCAATGGCAAAACTCTTGGTGCCGACGACAACATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTCAACGTACTTGTCTCCAAGGAAGTCATAGAAGGAAACATGTACTCGCTTGAGTCATACAAGTCCTCAGCAGAGAGCTTCATTTGCACACTGATACCCGAATCACCAAGCTCACACATAGAGTACACTCCAGGTGGACTTGTATTCAGACCCGGAGGTAGCAACTTGCAACATGCAACTTCAATTGCTTTCCTTGAATTGGTCTATGCCAATTACCTAACACGCACTTCACAAGCCATCAATTGTGGTAATGTCTATGTCAGTGCACAAACACTTCGCCAACATGCTAAGAAGCAAGTTGATTACATCTTGGGTGATAACCCAATGGGACTATCCTACATGGTTGGCTATAGCAACTACTATCCACAACGTATTCATCACCGTGGATCTTCTTTACCTTCCATCAAGGATCATCCTCAGTTCATTCCGTGCAAAGAAGGTTCAATTTATTACAACTCAACCAATCCTAATCCCAATGTACTTGTTGGTGCCATTGTTGGAGGACCTGACGAAAATGATGATTATATGGATGATCGAGTTGATTTTAGGAAATCCGAGCCAACCACATACATTAACGCACCATTTGTTGGTGTTTTAGCATATTTTGCTGCTAATCCCAACTTTAGTTGA 1479 0.4746 MRLFHIAAVLHAVLIVGLGRSSSHDYGDALSKAIIFFEGQRSGFLPEDQRVSWRGKSGLSDGWNYKTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDLMPPNELRNALVAIRWVTDYLLKTVSQPNRIFVQVGDPNSDHDCWERPEDMDTARTTYAVDAPNAASDVAGETAAALAAASMAFRSSDPGYSETLLRNAITAFKFADNYRGAYSDNDNVKYNACPYYCDFDGYQDELLWGAAWLRRATQDDSFLNYIQTNGKTLGADDNINEFGWDNKHAGLNVLVSKEVIEGNMYSLESYKSSAESFICTLIPESPSSHIEYTPGGLVFRPGGSNLQHATSIAFLELVYANYLTRTSQAINCGNVYVSAQTLRQHAKKQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIPCKEGSIYYNSTNPNPNVLVGAIVGGPDENDDYMDDRVDFRKSEPTTYINAPFVGVLAYFAANPNFS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0350 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 458 476 IPR033126 -
Aed5g0350 492 Pfam Glycosyl hydrolase family 9 26 482 IPR001701 GO:0004553|GO:0005975
Aed5g0350 492 Gene3D - 22 488 IPR012341 GO:0005975
Aed5g0350 492 SUPERFAMILY Six-hairpin glycosidases 9 487 IPR008928 GO:0005975
Aed5g0350 492 PANTHER ENDO-1,4-BETA-GLUCANASE 11 491 - -
Aed5g0350 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 385 411 IPR018221 -
Aed5g0350 492 PANTHER ENDOGLUCANASE 24 11 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0350 Aed-Chr5 2450820 2454715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0350 21 488 Glycoside Hydrolase AT1G70710 60.043 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0350 K01179 - gmx:100101849 960.288