Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0348 ATGGCTCTCAACCTCACACCTTCTTCTTCTTCCACTTTTTACTTTCACCCTTTCATTTCACACCAAATTCACTTCCATACTATTTCAAATCCTTTCTATCTCTTACGCTCCAAAACCTCAACCTCGTCACTCTCCAAAACCCTATGTCTTTGTGCATCACCATCCCACCCTTCACCAACTCCCATTTTCCTCCCATATCTCCAACAACAAGAATCAGAATCAGAACCAGAAGCAGAGCCAGAAAATCATGAAACCATAGTAGAAGAAGAACAAGAAGATGACCCAGATGATCCAATCTACCAATTCTTCAAAACCCGCACTCGGTTTTCTTCCCAAGACCCTGGAAAAGAAGGAAAATTGTCCCTTCAGAAGAACCGTCGCATCTCATGGCACCTTGCTTCTGACACCACCGACCTTGTTGAAGAAACGAGTTTGGTTGAAGAGAAGGAAGAAAAAGAAATGATGTTCAAGAAAAAGGCCTTGCCTTTGCCTTTGCCCGAGGGCATTGTGGGAGAGATTGTTCAGCTTGCAAGGAACTTGCCACAAAATCTAACTCTAGAAGAGGCTTTGGCTGAGTATGCAGGAAGGGTTAGTGAGAAAGAGTGTTGGGAGGTTTTGAAATTACTTGGGGAGGAGCAACTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAGCCTTCACTTGTTACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGAAAAGCAAGGATGGGTCATAAGTTGATGCTTTTGTTCACAAACTTGCCATCCACCAGGGACTTCAGAGATGTTCATGTTTATAATGCCGCAATTTCAGGCCTTCTTTCTAGTGTCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAACAGATAATGTTCTTCCAGATCATGTGACATGTTCTATTATGGTTATCGTAATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGGAGTTTTTTGAAAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGTGCCCTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAAGCTCTTATCCTCCTATCTGAAATGGAGGAGAAAGGTGTTTCTTCAAATGCAATTGTGTACAACACCTTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAAGCCGAAGGCCTCTTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAATCTACGTTCAACATTCTAATGTATGCATACAGCAGAAAAATGCAACCTGAGATTGTAGAGAAGCTGATGGCTGAAATGCAGGGTGTTGGCTTGAAGCCAAATGCCAAATCATATACTTGTCTAATCAGTGCATATGGGAAGCAGAAAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGATGGTATTAAACCCACTTCACATTCATATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGCGTTAAACCTTCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGTGCCGGTGACACCCAAACATTGCTGAAAATATGGAAAGTGATGAGGAGGGAGAAAGTCGAAGGAACACGTGTGACATTCAACACTCTTGTTGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATAACTGAATTTAGGAATGTTGGATTGCACCCAACTGTAATGACATACAATATGCTGATGAATGCATATGCACGAGGAGGGCGACACTCAAAGCTGCCCGAGTTGCTGGAAGAGATGGCAGCACGTAACTTGAAGCCAGATTCTGTAACTTATTCAACTATGATATATGCATTTATACGTGTTCGAGATTTCAGCCAGGCATTTTTTTATCACCAGGAGATGGTCAAGAGTGGGCAGGTGATGGATGTCAATTCTTACGAGAAGCTTCGGGCAATTCTGGATGCTAAAGCTGCAATTAAAATCAGAAAGGATAGGAGATCCTTGGTTGGTGTGGTTAGAAATAAGATGGGTGTTGTGAAACCGCAGAGAAAAAAGGATGAGTTATGGAAGTACAGGAAAAGACATGTGAAACAACGGTAG 2142 0.4206 MALNLTPSSSSTFYFHPFISHQIHFHTISNPFYLLRSKTSTSSLSKTLCLCASPSHPSPTPIFLPYLQQQESESEPEAEPENHETIVEEEQEDDPDDPIYQFFKTRTRFSSQDPGKEGKLSLQKNRRISWHLASDTTDLVEETSLVEEKEEKEMMFKKKALPLPLPEGIVGEIVQLARNLPQNLTLEEALAEYAGRVSEKECWEVLKLLGEEQLLVCCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMGHKLMLLFTNLPSTRDFRDVHVYNAAISGLLSSVRYEDAWKVYESMETDNVLPDHVTCSIMVIVMRKLGHSAKDAWEFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALILLSEMEEKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIKPTESTFNILMYAYSRKMQPEIVEKLMAEMQGVGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTQTLLKIWKVMRREKVEGTRVTFNTLVDGFAKHGHYKEARDVITEFRNVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAARNLKPDSVTYSTMIYAFIRVRDFSQAFFYHQEMVKSGQVMDVNSYEKLRAILDAKAAIKIRKDRRSLVGVVRNKMGVVKPQRKKDELWKYRKRHVKQR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Aed5g0348 713 MobiDBLite consensus disorder prediction 74 96 - -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 553 586 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 519 549 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 589 622 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 623 656 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 483 516 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Aed5g0348 713 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Aed5g0348 713 PANTHER OS03G0856100 PROTEIN 18 711 - -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Aed5g0348 713 PANTHER - 18 711 - -
Aed5g0348 713 Gene3D Tetratricopeptide repeat domain 323 463 IPR011990 GO:0005515
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Aed5g0348 713 Gene3D Tetratricopeptide repeat domain 169 322 IPR011990 GO:0005515
Aed5g0348 713 Gene3D Tetratricopeptide repeat domain 577 653 IPR011990 GO:0005515
Aed5g0348 713 Pfam Pentatricopeptide repeat domain 505 560 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 480 IPR002885 -
Aed5g0348 713 MobiDBLite consensus disorder prediction 69 99 - -
Aed5g0348 713 Gene3D Tetratricopeptide repeat domain 464 572 IPR011990 GO:0005515
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Aed5g0348 713 Pfam PPR repeat family 585 632 IPR002885 -
Aed5g0348 713 Pfam PPR repeat family 444 492 IPR002885 -
Aed5g0348 713 Pfam PPR repeat family 375 421 IPR002885 -
Aed5g0348 713 Pfam PPR repeat family 268 312 IPR002885 -
Aed5g0348 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Aed5g0348 713 Pfam PPR repeat 346 372 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0348 Aed-Chr5 2443336 2446391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0348 245 663 Glycosyltransferase AT1G05670 26.429 1.32e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0348 - - gmx:100775643 1223.38