Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0329 ATGGCCATTCAAGCACAGTGGTATCCAAATAATTCTGCTTCTCCATTCTACAACAATGGTTATTGCGCTGCTGGCCTTATTGACTCTCATATCAATTTTCAACCCAAAATTCATCTTCATCAGCAACAACAACAACAACAACAGCAGCTATCAGAACAGCATTTGAGAGAGTTATATAATGGGAGTCAAGGAATTGTTGATCCAAATCTTCATGTTTATAATTCAAAACCCGACAATTCTCCTATGTTTTCTGTTCAGCTTGAGAAGCAATGGGAAGAGATTGATCAGTACATCAAATCCGAGGATGAGAAATTGAGATATATGATACGAGAACATGGGAAACAACAAGTGATAGCATTGTTGAGAAAACTGGAATCTCGTTCGCTTAATGTCCTGAGGGAAAAGGATGAAGAAATTGCACAAGCTATGAAGAAAAGGGTAGAGTTGGAAGAGTATTTAATAAAGCTAGAGGCAGAAAATATGAAGTGGCAGAAAGTGGCGGAAGAGAAGGAAATCATGGCATTGTCCCTCTATAAGACATTGGAGGAAATGACAGAAGGTGGCAATGGGGTGGTGGTGGTGGCAAACGATGCAGTGTCCTTTTGTGGCGAAACTGGGGGAAAAGAAGAAGAAGCTACAGCAGAGAAAGAGAAACGTGTAGAATTATGTTGTGGTTTGGTGAGTGATGAGTCTAAACAACAGAAAACGAGAGGAGGAGTAATGGTTTGTAAAAGCTGTCATTCTAGGAGGTCGAGCTTTCTGTTTCTCCCATGCAGGCACCTTTCTTGCTGCAAAGTTTGCAACACTTTCCTCGAGGTTTGCCCTGTTTGCAGAACACCAAAGAAAGCTACCATTGAGTTAAGACTTTGA 870 0.4092 MAIQAQWYPNNSASPFYNNGYCAAGLIDSHINFQPKIHLHQQQQQQQQQLSEQHLRELYNGSQGIVDPNLHVYNSKPDNSPMFSVQLEKQWEEIDQYIKSEDEKLRYMIREHGKQQVIALLRKLESRSLNVLREKDEEIAQAMKKRVELEEYLIKLEAENMKWQKVAEEKEIMALSLYKTLEEMTEGGNGVVVVANDAVSFCGETGGKEEEATAEKEKRVELCCGLVSDESKQQKTRGGVMVCKSCHSRRSSFLFLPCRHLSCCKVCNTFLEVCPVCRTPKKATIELRL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0329 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 287 IPR013083 -
Aed5g0329 289 Pfam Zinc finger, C3HC4 type (RING finger) 242 282 - -
Aed5g0329 289 ProSiteProfiles Zinc finger RING-type profile. 243 278 IPR001841 -
Aed5g0329 289 SUPERFAMILY RING/U-box 239 282 - -
Aed5g0329 289 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 288 IPR017066 -
Aed5g0329 289 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 288 - -
Aed5g0329 289 PIRSF SBP1_RNase_bind 9 289 IPR017066 -
Aed5g0329 289 Coils Coil 132 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0329 Aed-Chr5 2257706 2259946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0329 242 279 Miscellaneous Gene Families AT4G39050 42.105 4.31e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0329 K19042 - gmx:100789863 435.647