Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0322 ATGACGTCAATTCTGAAATTGGTTTTGATTACGATGATGAGTGTTTCATTGGGCAGCAGTGCCGATGATTTGCCGTTCAAAATTGAGCCGCAGTATGATTACATAAAGTTCATGAAGCTGGCTCAGGAGAAAAAAATGTATATAACCCTCAGGCTTGGCCCTTTCATCCAAGCTGAATGGAATCACGGAGGGCTTCCATATTGGCTAAGAGAGGTCCCTGACATAATATTCCGCTCTAACAATGATCCATTCAAGAAGCACATGCAAGAATATGTATCAACTGTTATAAATACGTTGCGAGAAGAGAAGATGTTTGCCCCGCAAGGAGGGCCGATTATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCCTATAAAGAGCTAGGAGATAGTTATGTCCAATGGGCCGCCAAACTGGCTGTGGGTCTCGATCTTGGAATTCCATGGGTCATGTGCAAGCAGACAGATGCTCCTGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTGCCCTATGGACTGAAAACTGGACAGTTCAGTATAGAGTGTTTGGAGATCCACCATCCCATAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGATTCTTCTCTAAGAATGGGTCTTTGGTTAACTACTATATGATTATAGTTTTTGAGAGGGCAGGAGGTAAATTATGTTCTGCTTTCATCACCAACAACCACACCCAAAATGCAACCACCATAAAATTCAGAGGCACGGACTACTATCTGCCACCACGTTCCATTAGCATCCTCCCTGACTGCAAGACTGTGGTCCTCAACACTCAGAATATTGCTTCACAGCATAATTCAAGGAACATGGTGCCTACAAAGGAAGGAACCAATCTTAAGTGGGAGGTGTTTACTGAGCAAATTCCAACCACGAAGGAAGTTCCGGTGAATGCAAAGAAACCCATGGAGCTTTATAACTTGCTTAAAGACACGAGCGACTATGCATGGTACACGACCAAGGTGGAATTGGGTCCAGAAGACTTGCCAGTGAAGAATGGTGTATCCCCCGTTCTTCGAATTTTGAGTCTTGGCCATGCATTAAGCGCCTTTGTAAATGGAGAATTCGTTGGATCAAATCATGGTACCCATGAAGAGAAAGGTTTTGAATTCCAGAAACCTGTTTCCTTCAAGGTCGGAGTTAACCATATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTACGCTGGACCAAAGTCTATACTCGTAGTTGGTCTCAACTCTGGCAAAATTGATCTCACTTCTAATGGTTGGGGTCATAAGGTTAGTATATTTGGTGAGGAAAATATGATTTTCAATGAGGAGGGATCAAAGAAAGTACAATGGAAAGAAGCCAAGGGATTGGGACAGGCTATCTCCTGGTACAAGACAAATTTTCCAACTCCAGAGGGAAAGGATCCTGTTGCCGTTAGGATGACTAATATGGGGAAGGGAATGATATGGATAAATGGTAAAAGCATTGGTCGTCATTGGATGAGTTACCTCTCAGCTCATGGAAAGCCAACACAGTCAGAGTACCACATCCCAAGAGCATACCTGAAACCAAAAGAGAACTTGCTAGTTGTATTAGAGGAAGAGATAGCAAATCCATCAAAGATTGAAATCATAACAGTTAACAGAGACACAGTGTGCAGTATAATCACAGAGAATCACCCGGCCAATGTAAACTCATGGGCCGTTAAGGCCGGGAAGTTCCAGGCTATTGGCAATACTCCGGTGCCAACAGCTTCAGTCAAATGTCCATCCCACAGAACCATTAAGGCTGTCGAGTTTGCAAGCTTTGGTGATCCTTCGGGGTTCTGTGGTGAATTTGTTTTAGGCAAATGCGATGCACCTGCCACCAAGCAGGTTGTTGAGCAGTTATGCCTTGGAGCAGAATCTTGTGTCATTCCAATGGACAAGGCAGCCTTGGCTAAGGGCCAAGATCCTTGCCCAACTCTCATGAAGACACTTGCAATCCAAGTCAAGTGTGGCTGA 2082 0.4476 MTSILKLVLITMMSVSLGSSADDLPFKIEPQYDYIKFMKLAQEKKMYITLRLGPFIQAEWNHGGLPYWLREVPDIIFRSNNDPFKKHMQEYVSTVINTLREEKMFAPQGGPIILAQIENEYNHIQRAYKELGDSYVQWAAKLAVGLDLGIPWVMCKQTDAPDPVINACNGRHCGDTFAGPNKPYKPALWTENWTVQYRVFGDPPSHRSAEDIAFSVARFFSKNGSLVNYYMIIVFERAGGKLCSAFITNNHTQNATTIKFRGTDYYLPPRSISILPDCKTVVLNTQNIASQHNSRNMVPTKEGTNLKWEVFTEQIPTTKEVPVNAKKPMELYNLLKDTSDYAWYTTKVELGPEDLPVKNGVSPVLRILSLGHALSAFVNGEFVGSNHGTHEEKGFEFQKPVSFKVGVNHIAILACTVGLPDSGAYMEHRYAGPKSILVVGLNSGKIDLTSNGWGHKVSIFGEENMIFNEEGSKKVQWKEAKGLGQAISWYKTNFPTPEGKDPVAVRMTNMGKGMIWINGKSIGRHWMSYLSAHGKPTQSEYHIPRAYLKPKENLLVVLEEEIANPSKIEIITVNRDTVCSIITENHPANVNSWAVKAGKFQAIGNTPVPTASVKCPSHRTIKAVEFASFGDPSGFCGEFVLGKCDAPATKQVVEQLCLGAESCVIPMDKAALAKGQDPCPTLMKTLAIQVKCG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0322 693 Gene3D - 607 693 IPR043159 -
Aed5g0322 693 Coils Coil 114 134 - -
Aed5g0322 693 Gene3D - 289 429 - -
Aed5g0322 693 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 109 121 IPR019801 GO:0004553|GO:0005975
Aed5g0322 693 Pfam Galactose binding lectin domain 614 692 IPR000922 GO:0030246
Aed5g0322 693 PANTHER BETA-GALACTOSIDASE RELATED 234 689 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 Gene3D Glycosidases 23 266 - -
Aed5g0322 693 PANTHER BETA-GALACTOSIDASE RELATED 26 231 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 234 689 - -
Aed5g0322 693 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 26 231 - -
Aed5g0322 693 Pfam Beta-galactosidase jelly roll domain 475 558 IPR025300 -
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 485 499 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 188 203 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 512 528 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 50 69 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 225 240 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 PRINTS Glycosyl hydrolase family 35 signature 107 122 IPR001944 GO:0004553|GO:0005975
Aed5g0322 693 SUPERFAMILY Galactose-binding domain-like 272 432 IPR008979 -
Aed5g0322 693 Pfam Glycosyl hydrolases family 35 27 232 IPR031330 -
Aed5g0322 693 SUPERFAMILY Galactose-binding domain-like 451 595 IPR008979 -
Aed5g0322 693 ProSiteProfiles SUEL-type lectin domain profile. 609 693 IPR000922 GO:0030246
Aed5g0322 693 SUPERFAMILY (Trans)glycosidases 31 234 IPR017853 -
Aed5g0322 693 Pfam Beta-sandwich domain in beta galactosidase 224 288 IPR041392 -
Aed5g0322 693 Gene3D - 457 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0322 Aed-Chr5 2215987 2220367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0322 232 693 Glycoside Hydrolase AT2G16730 52.146 8.42e-168 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0322 - - lja:Lj3g3v3453440.1 828.935