Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0321 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACCACTCGTTCAAGCAAGCGTGCACGCCTCTCTTCTTCTTCCGCCGCCGCCGCATCTGTTTCTTCTGTGAACACTCGCTCCCGTGCATCCAGGACTAAGGAACCACCCTTGCCTCCTCCTCCTCCTAAGAATCCTCTTCCCATGGACTCTGTCAATGAATCCTCTGGCTCCCGCCGCGATCGACGCAACAAAGACAACAACAACAACTCCGACAAGGGAAAGGAGAAAGAGCATGATGTTAGGATTAGGGACAGGGATGCGGACAGAGACAGAGGCCTTGCATTGAACATGGCTGCTGCTGCTGCTGCTGCTGGAGACGACGATGACAATGACAGTGAAGGCGGTGTGGGGATTTTGCATCAAAACTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGTAAACTTGGTGCTGGTTTGGATGATCTGCTTCCATCCTCGGCTATGGGTTCTGCGTCTTCCTCTCACCAGACTGGGAGGCTGAAAAAGATCCTCTTTGGGTTGAGGGCCGATGGCGAAGAAGGGCGTCAGGTTGAAGCATTGACGCAGCTCTGTGAGATGCTCTCGATTGGGACCGAAGAATCACTCAGTACATTCTCTGTTGATTCATTTGTTCCCGTGCTTGTGGGGTTGTTGAATCACGAGAGCAACCCTGACATCATGCTTCTTGCTGCCAGAGCATTAACCCATCTCTGCGATGTGCTCCCTTCGTCTTGTGCTGCTGTTGTGCACTATGGTGCAGTCTCAATCTTCTGTGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCACCCCACCGCCTGTCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAATCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCATGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCGTCATCTCCAGACAAATTAGATGAATTGTGCAACCATGGACTTGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATACACCGGTTTAATCCGACTTCTTTCAACCTGTGCGAGTGGATCCCCTCTTGGAACTAAAACCTTACTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGACTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGACCACCAGAACAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTGCCCCCATTGCCACATGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTATAAAGAAGTCTCCTGCTGGCAGCTCTGGGAAACAAGAAGAGACAAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAACTATTAAATGATCAGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGCCCTGTTCGGCACAAATGCCTTTCTGTCATTGGAAAATTGATGTATTTCAGTACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCTGGCGTCCTAGCATGGAAGGATCCGCATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGAGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAGCTGGAAATTCAACCAATATATCTGCACAGGCCTCTTCTGCCGAAAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCCAGGCGTTATCGGCGACGCAGTGGGAATTCCAATCCTGATGGAAATCCTTTGGATGATTTAAAAACTCCAGTTTCAGTAAATGTTGGTTCGCCTCCAAGTTCTGTGGATATGCCAACAGTAAATTCCAGTATTCGGTTATCTGTTAGTACAGCTGCCAAAGCTTTTAAAGATAAGTACTTCCCTTCAGATCCCGGGGCTCCTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCTGATGAACAAAGGACTAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAAGAGACTTTAATTGGAATGATAGCAGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAGCCTTGTTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGCCCATTAGAAACTCACCTTCCCAAGCTTCGCCAGCAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCTACTGAAGATTGGACTGTGGCTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCGTCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAACCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTGTGGCCTCGTATCCAACGAAGTGAATCTGGTCAGAAGGCCACTGTACTTGCTGGGAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTATCCTCTCCTTCCACTACCCGTCGTCATTCTACTAGAGCCAGATCATCTGTTAATATAGGTGATACATCCAGAAAGGAAATAACTCAAGATAAAAACACAAGCTCTTCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAGACCAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATCCTCAAATAAAACCTGTAAACGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCCCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGATGTACTGAGGGATGATTCTCTTCCTGTTTGTTCACCTGACAAAGTACACGATGTGAAATTGGGCGACTTAGCGGAGGAGAGTAATGTTGCTCCTGCAACAAGTGATGACCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGTCAGGGGATCAGACTCTGCTGATTTTCTTAAGAGTGGCTATACCTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGGGATCGACTAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCGCCAAAGATGATATTTGCTGCTGGTGGGAAGCAGCTTAATAGGCACTTGACTATTTATCAGGCAATCCAAAGGCAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTAATGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCCAACAGATAGGACTCCCCCTGGAGGTTCAACCTCTATTGCTTCAAAATCTTCCAAATCTGGGTCAGTATCAAATTCTAGTTCTGAAGCCAAGCTGCATCAGACATCTGTATTAGATAGTATTTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTACTTGAGGGATTGAACCAACTTGCATCTCGTTTTAGGGCCCAAGTGGTCACCGATAGCTTTGCAGAGGGACAAATTTTGGATTTAGATGAGCTAAGTGTTACCAGTGGTGCTAGGGTTCCTACAGAAGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATTCAAGATGCCCTTGCCTTGTGCAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAAGCGTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTACTTTTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGATCAGGGTTGGGAGATTGCAGCGTCAGAAGGTTCGTGTCTCTCGAAATCGCATTTTGGAATCTGCTGCTAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTAGGTCCCACCCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCGGGTTCTTCAGAGAAATATCAAATGGAAATTGATGTAGATGAAAAGAAAATGAAAAGTAGTGAAGACTCTTTTGTTGGAGATGGAGGACTTGTTCAGGCTCCTCTTGGATTGTTTCCTCGACCTTGGCCTGCAAATGCCGATGCTTCAGAGGGTACCCAAGTGTTTAAAGTGATTGAATATTTCCGGCTATTAGGCCGTGTAATGGCCAAAGCTCTTCAAGATGGACGCCTATTGGATTTACCATTGTCAATGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAACGTTATTTACAATCGATTGGTGGTAGCTCTACCGATACCATTGCTAATTTTCATTTTCGTGGGGCCCTAATAGAAGATCTCTGCTTGGACTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAACCCGGAGATGAAAATGTTGACATCAATAATCTAGAGGAATACATATCCATGGTGGTTGAGGCAACTGTTAAGACTGGAATCATGCGTCAACTGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCCTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGTAGAGAACTGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGATCATGGTTATACTGCCAAGAGCCCTGCCATAATTAATTTACTCGAAATTATGGGAGAATTCACACCAGAGCAACAGCTTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCTCCTGGTGGATTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCCTCATCTAATGGGAATGGGCCTCCAGAATCAGCGGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACTTAAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTTCAAAAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5658 0.4475 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSAAAASVSSVNTRSRASRTKEPPLPPPPPKNPLPMDSVNESSGSRRDRRNKDNNNNSDKGKEKEHDVRIRDRDADRDRGLALNMAAAAAAAGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQTGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGTKTLLLLGISGILKDILSGSGLSSNASVSPALSRPPEQIFEIVNLANELLPPLPHGTISLPIISNMFLKGPIIKKSPAGSSGKQEETNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLLPALKIAEILMEKLPETFSKMFIREGVVHAVDQLILAGNSTNISAQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPSSVDMPTVNSSIRLSVSTAAKAFKDKYFPSDPGAPEVGITDDLLHLKNLCMKLNAGADEQRTNGKGKSKTSGFGLEETLIGMIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPLETHLPKLRQQALTRFKLFIAVALPSTEDWTVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFLWPRIQRSESGQKATVLAGNSESGTTPAGAGVSSPSTTRRHSTRARSSVNIGDTSRKEITQDKNTSSSKGKGKAVLKPAQEEARGPQTRNATRRRAALDKDPQIKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDKVHDVKLGDLAEESNVAPATSDDQTNAASGSSSKAGTVRGSDSADFLKSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLFGSSNDPPKMIFAAGGKQLNRHLTIYQAIQRQLVLDEDDDERFAGSNDYVSSDGSRLWGDIYTITYQRAENPTDRTPPGGSTSIASKSSKSGSVSNSSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRFRAQVVTDSFAEGQILDLDELSVTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREIRVGRLQRQKVRVSRNRILESAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSGSSEKYQMEIDVDEKKMKSSEDSFVGDGGLVQAPLGLFPRPWPANADASEGTQVFKVIEYFRLLGRVMAKALQDGRLLDLPLSMAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKRYLQSIGGSSTDTIANFHFRGALIEDLCLDFTLPGYPEYILKPGDENVDINNLEEYISMVVEATVKTGIMRQLEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIINLLEIMGEFTPEQQLAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPPESADDDLPSVMTCANYLKLPPYSTKEIMFKKLLYAISEGQGSFDLS 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0321 1885 SMART arm_5 342 380 IPR000225 GO:0005515
Aed5g0321 1885 SMART arm_5 299 339 IPR000225 GO:0005515
Aed5g0321 1885 SMART arm_5 216 257 IPR000225 GO:0005515
Aed5g0321 1885 MobiDBLite consensus disorder prediction 10 54 - -
Aed5g0321 1885 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 75 1885 IPR045322 GO:0006511|GO:0061630
Aed5g0321 1885 MobiDBLite consensus disorder prediction 963 1110 - -
Aed5g0321 1885 Pfam HECT-domain (ubiquitin-transferase) 1512 1885 IPR000569 GO:0004842
Aed5g0321 1885 MobiDBLite consensus disorder prediction 56 70 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 660 717 - -
Aed5g0321 1885 SUPERFAMILY Hect, E3 ligase catalytic domain 1457 1878 IPR035983 GO:0004842
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1265 1299 - -
Aed5g0321 1885 Gene3D Hect, E3 ligase catalytic domains 1404 1647 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 963 1005 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 77 109 - -
Aed5g0321 1885 SUPERFAMILY ARM repeat 185 655 IPR016024 -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1124 1154 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1 109 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 660 676 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1063 1097 - -
Aed5g0321 1885 ProSiteProfiles HECT domain profile. 1585 1885 IPR000569 GO:0004842
Aed5g0321 1885 Gene3D - 537 665 IPR011989 -
Aed5g0321 1885 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 75 1885 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1126 1148 - -
Aed5g0321 1885 Gene3D Hect, E3 ligase catalytic domain 1757 1883 - -
Aed5g0321 1885 MobiDBLite consensus disorder prediction 1037 1051 - -
Aed5g0321 1885 Gene3D - 174 492 IPR011989 -
Aed5g0321 1885 SMART hect_3 1475 1885 IPR000569 GO:0004842
Aed5g0321 1885 CDD HECTc 1464 1880 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0321 Aed-Chr5 2205089 2214702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0321 K10590 - gmx:100783336 3193.29