Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0305 ATGCCAATGCCATCTCCCTCATTCCCAACCCTCAAATCCCCCCACAACCTCTGCATCGTCAAATCCCTCATCTCCAAGTCTTCCCTCTCCGACGCCGTTTCTTCTCTGGACCTCTTGCGCCTCAAGGGCATTCGCTTACCCTCTCACGTTCTCGCCACCCTCTTGCGCCATTGCTCCAAAACCAGGTCTTACCGGGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGTTTCAAACGCCCCCCAACGCTTCTAGCCAACCACTTGATCTCCATGTACTTCTGCTGCGGCGATTTCGTCCAAGCACGCAAGCTGTTCGACAAAATGGACAACAGAAATTTGTACACCTGGAACAATATGCTTTCTGGGTATGCTAATTTGGGCTTGATGAAGCAAGCTAGGAGCTTCTTCTACCAAATGCCTCACAAGGATTATGTATCTTGGAATTCAATGGTGGCTGGGTATGCACACAGGGGCAGATATCCCGAGGCTTTGAGATTCTATCGACAGTTCAGGAGATTGTCTGTTGGGTATAACGAGTTTAGCTTTGCCGGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTAGTTGTTGGGTTTTTGTCCAATGTAGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGTGGAAATATGGAAGACGCGAGGAGATTATTTGATGAGATGCCTGTGAGGGATGTTCGAGCATGGACAACATTAGTTTCAGGTTATGCCGCCTGGGGGGACATGGAATCCTGTGCAGAGTTGTTTAGTCAGATGCCTAAAAGCGATTCCTGTTCGTGGACATCTTTGATTAGAGGTTATGCAAGCAATGGTATGGGTTATGAAGCCCTTCGAGTGTTTAGACAAATGATAAAGCATCAAGTTAGACCCGATCAATTTACATTCAGTACTTGCCTCTATGCTTGTGCCAGTATTGCTTCACTCGAGCATGGTAGACAAATACATGCTTTTTTGGTGCAGAATAACATCAAACCTAATTCTATTGTTGTTTGTGCTATTGTTAACATGTATTCAAAATGTGGAAGCATGGAAACTGCCAGGCGAGTCTTTAATTTCATTGGAAATAAGCAGGATGTAGTGTTGTGGAACACAATGATATTGGCACTGGCTCTCTATGGGTATGGTATAGAAGCAATTACGATGCTATATAATATGCTAAAATCAGGAGTGAAGCCAAATAGGGCCACTTTTGTTGGCATTCTAAATGCTTGTTGTCATTCAGGTCTTGTTCAGGAAGGGCTTCAGTTATTCAAGTCCATGACTAGTGAGCATGGTGTTGTCCCTGACCAAGAACACTATACGTGCTTAGCTAATCTTTTGGGTCAAGCTCGATGTTTTAACGAATCAGTGAAGGATCCACAGATGATGGATTGTAAGCCAGGTGACTGTGTTTGTAATTCTTCAACTGGTGTACGTAGAATGCATGGGAATATAGATCATGGGACAGAAGTAGCTGCATTCCTTATTAAATTGCAGCCACAATCCTCTGCTGCCTATGAATTACTTTCAAGTACATATGTTGCACTTGGGAAATGGGAATTGGTTGAGAAAATAAGACATATTTTGGATGAGAGGAGAGGAAAAGGTCAGGCTATTAGTTGGATTGAAATTTGA 1677 0.4359 MPMPSPSFPTLKSPHNLCIVKSLISKSSLSDAVSSLDLLRLKGIRLPSHVLATLLRHCSKTRSYREGKLIHLHLKLTGFKRPPTLLANHLISMYFCCGDFVQARKLFDKMDNRNLYTWNNMLSGYANLGLMKQARSFFYQMPHKDYVSWNSMVAGYAHRGRYPEALRFYRQFRRLSVGYNEFSFAGVLIVSVKLKDFELCRQIHGQVLVVGFLSNVVISSLIVDAYAKCGNMEDARRLFDEMPVRDVRAWTTLVSGYAAWGDMESCAELFSQMPKSDSCSWTSLIRGYASNGMGYEALRVFRQMIKHQVRPDQFTFSTCLYACASIASLEHGRQIHAFLVQNNIKPNSIVVCAIVNMYSKCGSMETARRVFNFIGNKQDVVLWNTMILALALYGYGIEAITMLYNMLKSGVKPNRATFVGILNACCHSGLVQEGLQLFKSMTSEHGVVPDQEHYTCLANLLGQARCFNESVKDPQMMDCKPGDCVCNSSTGVRRMHGNIDHGTEVAAFLIKLQPQSSAAYELLSSTYVALGKWELVEKIRHILDERRGKGQAISWIEI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0305 558 Pfam PPR repeat family 379 427 IPR002885 -
Aed5g0305 558 Pfam PPR repeat family 277 324 IPR002885 -
Aed5g0305 558 Gene3D Tetratricopeptide repeat domain 189 375 IPR011990 GO:0005515
Aed5g0305 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 274 - -
Aed5g0305 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 143 558 - -
Aed5g0305 558 Gene3D Tetratricopeptide repeat domain 19 183 IPR011990 GO:0005515
Aed5g0305 558 Gene3D Tetratricopeptide repeat domain 376 557 IPR011990 GO:0005515
Aed5g0305 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 147 176 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 249 277 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 222 247 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 116 145 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Aed5g0305 558 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Aed5g0305 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Aed5g0305 558 SUPERFAMILY TPR-like 93 305 IPR011990 GO:0005515
Aed5g0305 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Aed5g0305 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Aed5g0305 558 SUPERFAMILY TPR-like 225 534 IPR011990 GO:0005515
Aed5g0305 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Aed5g0305 558 Pfam PPR repeat 249 276 IPR002885 -
Aed5g0305 558 Pfam PPR repeat 116 144 IPR002885 -
Aed5g0305 558 Pfam PPR repeat 147 175 IPR002885 -
Aed5g0305 558 Pfam PPR repeat 88 114 IPR002885 -
Aed5g0305 558 Pfam PPR repeat 220 245 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0305 Aed-Chr5 2083566 2085242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0305 36 558 Glycoside Hydrolase AT3G49170 28.166 1.21e-65 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0305 - - gmx:100798659 956.051