Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0262 ATGAGAGGCGTTGGGAGAGCGTTTGCGTTTGCGAGGAGGAAGTTGTTGTACAGTGATCCTCGTTCTCGTTCTCGTTCATACAGTCTGGTCCCAATGGTGATTGAGCACTCCTCCCGAGGAGAGAGGGCTTACGACATCTTCTCCCGTCTTCTGAAGGAGCGCATTATCTGCATCAACGGTCCCATCTCCGACGACACCGCTCACGTCGTCGTCGCCCAGCTGCTCTTCCTCGAATCCGAAAACCCTTCGAAACCCATCCACATGTACCTCAATTCCCCCGGTGGCGCCATCACAGCAGGTCTTGCTATTTATGATACTATGCAGTATATTCGGTCTCCGGTTAATACAATATGTATGGGTCAAGCTGCTTCCATGGGTTCTCTCCTATTGGCCGCTGGTGCCAAGGGGGAGAGGCGCTCTCTTCCAAATGCAACAATCATGATTCACCAGCCTTCTGGCGGTTATACTGGCCAGGCTAAGGATATTACAATCCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTGAATGTGTTGTATGCCAAGCATACGGGCCAGTCTGTTCAGGTTATTCAGACAAACATGGACAGGGATAACTTTATGACTCCACAGGAGGCCAAAGACTTCGGTCTCATTGATGAAGTTATTGATCAGAGACCTGTGGCTTTGGTTTCCGATGCCCTCGTTAAAGCTTCCGATTAG 702 0.5014 MRGVGRAFAFARRKLLYSDPRSRSRSYSLVPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAITAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYTGQAKDITIHTKHIVRVWDSLNVLYAKHTGQSVQVIQTNMDRDNFMTPQEAKDFGLIDEVIDQRPVALVSDALVKASD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0262 233 PRINTS Clp protease catalytic subunit P signature 45 60 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 PRINTS Clp protease catalytic subunit P signature 116 133 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 PRINTS Clp protease catalytic subunit P signature 194 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 PRINTS Clp protease catalytic subunit P signature 85 105 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 PRINTS Clp protease catalytic subunit P signature 137 156 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 21 230 IPR023562 -
Aed5g0262 233 Pfam Clp protease 39 218 IPR023562 -
Aed5g0262 233 CDD S14_ClpP_2 45 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 29 219 IPR001907 GO:0004176|GO:0004252|GO:0006508
Aed5g0262 233 Gene3D - 18 224 - -
Aed5g0262 233 ProSitePatterns Endopeptidase Clp serine active site. 116 127 IPR018215 -
Aed5g0262 233 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 21 230 - -
Aed5g0262 233 SUPERFAMILY ClpP/crotonase 37 220 IPR029045 -
Aed5g0262 233 ProSitePatterns Endopeptidase Clp histidine active site. 138 151 IPR033135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0262 Aed-Chr5 1791441 1792208 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0262 K01358 - gmx:100791303 390.193