Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0144 ATGGGAATTGTTGGCTTTGAAATTAATGCGAATTCTGCTTCTGCTTTGCATTATGGTGCTAATTCGTTATCTTCCTACACGGTTCCTATTTCTCTGAGACCCTTTTTCGGCAATGCTTTGAACGCGAGGGTTGCGGGGAAGATTCGCGTCTCTCATACTCCAAAGCCCAATTTCGGAGCTGTTATTGCTTCACTGAGTGGTGGCTCTAATGCTGGGTTGGTTAGTGACGCGCTTCTTCCAAATGACTCTGAATTTAAGCCATCTTTCGACGAATATTTGAAGGCCATGGAATCTGCCAGAACTATTAGGGGTAAGAACCGTGCTGCCACTACTCAAAAACACAAGACCACGGAAAAGAGTGATAGAGGGGATAGCACTAGAAAATTTAACAGTGCTGGAAAGAAATTTGACAGAAAACACGGGATTGAAAAAGTTGAAGAATGTTCCTCCAGAAGTAACGGCAAGGTCAGAAGAACAGCAACTAAAGGATTTAGAAATGAACATTATGGGAAAGAAAGGAACCTTGATGTAAAGGCAAAGCAGAAAAATGGAGAAAATGTACAACAAAATGGGCCATCGAACCGCCCGAGTCACGGTTTAGAACTACAATCTAATGATTGCAGTGAGATTAACAGAAGTAGAAGTGGAAGGATGAGCAAGAGCATAGTTATGAGGTCTAGTTTGAATGGGAGCCATGGGAGAGTCATAAAGAGGGGGGTTACTCATGATTTATATTCTTCAAAGTTGTCTGGAGAAAAAGTTGTTAGTAGCAGACAGAGGGATTACAACACACAAATTGCAGCAAGACAACAAGTTCAGGATAGAGGGCTAGGTAGAAGACATACTGAAAATGGAAGTTTGGTAAATAGAAATGGAAGCCATAAGCGTTTCATCAATAGGGGTTATGATTCTGACAATTTGGAGGTGGATCGAGCAGCATTCGAGAATCTTGAGGACCCAAACCGTGTTATCAAAAAGTCACAATTTTCACATAAGGAAATGGAGGAGAAAATCCAAAAGCTGGCCAATTCTTATGCCTTATGTCAGCCAATAATTCATGAGCTGGTGAAATGGTGCTTAACTCCCATGCAATCTCTAAATGACAAGCCCCTAACGGCTGGTTATTTTGCTCAAGTGCATTCCTTTATTTTTATGGGAGCATGGTTTGTCTCTGCATTTGGGAGTGTAAATTACTGTTGGCCCCAAAGAAAAATGGAGAACAAAAGGTTAAATGGTGCAGATATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTAATGACTATTCCATAACAAGGATTATCATAGTCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGATCGTTTCATGTCCCATAAGCTAAGGCATATATATACTGCTGCTCTTGATGCACTTGGAAAGTCGAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGAAAAAGATATCCTCATATCCTGATTTAATAGCTTATCGTAGTATTGCTGTCACTCTTGGACAAGCAGGGCACATGAAGGAACTTTTTGATGTGATTGATATTATGCGATCACCACCTAAGAAGAAGATCAAAACAGGGATATTTGAGAACTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAGGCGGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGGAGCAAGGACAACAGCCTTCTGCCACAACTTACGGCCTAGTTATGGAGGTGATGCTCTCATGTGGCAAGTATAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGAAAGAGGAAAAAACTGATGAGGCTATATTGGCTGTTCAAGAAATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACGCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCAAATCTGGTTACTTGTAACATAATTCTGAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGTGTTGTTTGAGCAGATGTCAGAAAATGCAAATCGTCTGACGGAAAATACTGATTACAAAATGCTGGTGGTACCAGATACATACTCATTCAACACCATGTTAGATGCATGTGTTGCAGAGAAGAAATGGGATTATTTTGATCATGTCTATCAAAGGATGCTGTACCATGGTTTTCACTTCAATCCAAAACGTCATCTTCAAATGATATTAGAGGCTTCAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACATGGAAGCACTTGACTGACACGGATCGAAGTCCACCAACTCCCCTGATCAAGGAGAGGTTCTGTGCAAAGCTTGAGAAAGATGACTATGTTGCTGCTCTCACGTGTATCATTAACAATCCCCCAAAAGACTTGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTTAAAGAAAATTCTCAACGATTTCAGAAGGATACGGTTGTTGAACTAATGAACGAGGCCAGCAATATAGTTTCCAATAATAATTTGCCAAATCCAACAACACTCGAGTATTTAATTCAATCATGTAAAGAATTTCTTTTTGCCACCAACATCGATTCAGTAAAAAATGTAGTAGTGGTAGAGAGTAAGCTGGCAGTAGCCAACTCTTGA 2883 0.4034 MGIVGFEINANSASALHYGANSLSSYTVPISLRPFFGNALNARVAGKIRVSHTPKPNFGAVIASLSGGSNAGLVSDALLPNDSEFKPSFDEYLKAMESARTIRGKNRAATTQKHKTTEKSDRGDSTRKFNSAGKKFDRKHGIEKVEECSSRSNGKVRRTATKGFRNEHYGKERNLDVKAKQKNGENVQQNGPSNRPSHGLELQSNDCSEINRSRSGRMSKSIVMRSSLNGSHGRVIKRGVTHDLYSSKLSGEKVVSSRQRDYNTQIAARQQVQDRGLGRRHTENGSLVNRNGSHKRFINRGYDSDNLEVDRAAFENLEDPNRVIKKSQFSHKEMEEKIQKLANSYALCQPIIHELVKWCLTPMQSLNDKPLTAGYFAQVHSFIFMGAWFVSAFGSVNYCWPQRKMENKRLNGADINLPEWMFSKMIRSARLKFNDYSITRIIIVLGKLGNWRRVIQVIEWLQKRDRFMSHKLRHIYTAALDALGKSRRPVEALNIFHAMQKKISSYPDLIAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKIKTGIFENWDPRLEPDIVVYHAVLNACVRRKQWEGAFWVLQQLKEQGQQPSATTYGLVMEVMLSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLWKEEKTDEAILAVQEMERRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDAGNIQDGAYIFEKMKEICAPNLVTCNIILKAYLEHGMFQEAKVLFEQMSENANRLTENTDYKMLVVPDTYSFNTMLDACVAEKKWDYFDHVYQRMLYHGFHFNPKRHLQMILEASKAGKERPLEITWKHLTDTDRSPPTPLIKERFCAKLEKDDYVAALTCIINNPPKDLQPFSKSSWLKLFKENSQRFQKDTVVELMNEASNIVSNNNLPNPTTLEYLIQSCKEFLFATNIDSVKNVVVVESKLAVANS 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0144 960 PANTHER OS01G0674700 PROTEIN 408 947 IPR044645 GO:0009658
Aed5g0144 960 PANTHER OS01G0674700 PROTEIN 16 344 IPR044645 GO:0009658
Aed5g0144 960 SUPERFAMILY TPR-like 543 765 IPR011990 GO:0005515
Aed5g0144 960 TIGRFAM PPR: pentatricopeptide repeat domain 560 593 IPR002885 -
Aed5g0144 960 TIGRFAM PPR: pentatricopeptide repeat domain 733 761 IPR002885 -
Aed5g0144 960 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Aed5g0144 960 Coils Coil 748 768 - -
Aed5g0144 960 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Aed5g0144 960 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Aed5g0144 960 PANTHER OS01G0674700 PROTEIN 408 947 - -
Aed5g0144 960 PANTHER OS01G0674700 PROTEIN 16 344 - -
Aed5g0144 960 MobiDBLite consensus disorder prediction 271 292 - -
Aed5g0144 960 MobiDBLite consensus disorder prediction 103 203 - -
Aed5g0144 960 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Aed5g0144 960 MobiDBLite consensus disorder prediction 181 203 - -
Aed5g0144 960 Gene3D Tetratricopeptide repeat domain 680 845 IPR011990 GO:0005515
Aed5g0144 960 MobiDBLite consensus disorder prediction 160 180 - -
Aed5g0144 960 Pfam PPR repeat 780 810 IPR002885 -
Aed5g0144 960 Pfam PPR repeat 475 502 IPR002885 -
Aed5g0144 960 Pfam PPR repeat 630 659 IPR002885 -
Aed5g0144 960 Gene3D Tetratricopeptide repeat domain 547 645 IPR011990 GO:0005515
Aed5g0144 960 Gene3D Tetratricopeptide repeat domain 406 546 IPR011990 GO:0005515
Aed5g0144 960 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Aed5g0144 960 MobiDBLite consensus disorder prediction 111 153 - -
Aed5g0144 960 Pfam Pentatricopeptide repeat domain 696 742 IPR002885 -
Aed5g0144 960 Pfam Pentatricopeptide repeat domain 555 604 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0144 Aed-Chr5 1072647 1079926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0144 578 828 Glycosyltransferase AT1G05670 21.569 4.78e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0144 - - gmx:100787028 1025.77