Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed5g0134 | ATGGCTGTTGAGACTTCCGGTAAACCAAATTTACCTCATAGTTTTGATGATGATGATGATGATGATGGGCCAGTAATTTACAAAAGGTACTCATCATCTAAGAAAAATCAATCGCAATCAGAAGTAAGGAAGTTGAGTTCTCACAGTCATGATGGGCAATCATATAGACAAATTTCTAATGCACCTTCATCGAATGGCCAAACATCTAGCATGCAGAAAGGTAATACTGCCCCATCTGCTAAGCCATCACCTGTGAAGCCTTCTGTAGGTATCTCTAAAGCTTCAAATTCTCTTGTTAACACGTCCTCTACGAAGTTTCCTGTAGCAAATTCAAAACCATCATCATTGGGAGATAAACAGAAAATGTCCATTGAAGTTAAGCAGGAACCAAAATCTATTGCACGCTCTGCTAAAAATTCCTGTGAAGATTCAGAAGATGATGAGGATACTAAACCGTTGAGTTTTAGGTTGAAGAATTCTAACCATGATAACAAAGCGACCCCTGTAGTCAAAAAATCTTCTGAAGACTCTGATGATGATGATGATGTCCCTTTGGCTAAAAAGTTAAACCGTAATTCTAATTTGGGAACAGCTAGCAGGAACCATGATGACTCTGATCAGAAGAAGCCTATTTCTAAAATTCAGAAAGAGCGCCAAAATGGTTCTGGCATGAGTAATAAACAAGATAGGCCATCTCCATTGCCAGCTAAGAGACCACTAGATAATAGTAATTCCTTGCACCCCTCTGTTAAGAAGTCAAAGGTCTCAGATCCAGCTGCATCTATCAAAACTAAACCAGTTCCTGTGAAACATGAGCTGAAGGTAGAGGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAATCAGCCATGTCAGGTGACAAATCATCTTCCACAAAGAAGGTGCTGACAAAGGTTACTAAAGTTAATAAGTCTGGTTCAAAATATTTTAAGAAACAGACCAAGAAGCCAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCTTCAAAAGTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCTCCTCCATACCAGCCACATGGGGTAAAGATGCTCTACAAGGCTAGACCTGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGAGTACATGCAGAAAGATAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGGTACTTGGAAGAAATCATGTAATCCAGAACCTGAAAGATTGTGATTTTACTCCAATCTATGACTGGTGCCAAAGTGAGAAGGAAAAGAAGAAACAAATGACTACAGAAGAGAAGAAGGCGGTGAAGGAAGATAAAATGAAGCAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGTGGCCGAGGAGAGCACCCAAAGATGGGAAAATTGAAAAGCCGCATTCGTCCCGGTGATATCACAATTAATATTGGAAAGGATGCGCCAGTTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGATATAAGACATGATGATACAGTTACTTGGTTAGCCTATTGGAGTGACCCTATCAATCCCAAGTTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAAGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGGGAATATTAGGTCTGCATACACAAAAGATTTTACCAGTAAAGATATTACAAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAGCCCCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGATAAAAAGCCTGGTGATGATCTTTTCGATAAGCTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCCGGTCTAACAGCAAAAGTCTTCCGTACCTTCAATGCATCAATCACATTGGATCTTATGTTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAACATGCAAATAAACAGGTTGCTATTATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACAGTGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGTTGTTCTGAAAGAGCTGAAAACGGATTTAGACAGGGTAAGGAAAGGAAAGCCCCCTTCGAAGAGTTCAGATGGAAAGAGAAAAAAGAACTTGAGTCCTGAAATGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATCGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTGGGCACATCCAAGATAAATTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCGAAATTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2688 | 0.3906 | MAVETSGKPNLPHSFDDDDDDDGPVIYKRYSSSKKNQSQSEVRKLSSHSHDGQSYRQISNAPSSNGQTSSMQKGNTAPSAKPSPVKPSVGISKASNSLVNTSSTKFPVANSKPSSLGDKQKMSIEVKQEPKSIARSAKNSCEDSEDDEDTKPLSFRLKNSNHDNKATPVVKKSSEDSDDDDDVPLAKKLNRNSNLGTASRNHDDSDQKKPISKIQKERQNGSGMSNKQDRPSPLPAKRPLDNSNSLHPSVKKSKVSDPAASIKTKPVPVKHELKVEDDDDDIPISQRIKKSAMSGDKSSSTKKVLTKVTKVNKSGSKYFKKQTKKPVKKSGSGSEYSKSSKVLPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLYKARPVDLTPEQEEVATMYAVMRDTEYMQKDKFKENFWNDWRKVLGRNHVIQNLKDCDFTPIYDWCQSEKEKKKQMTTEEKKAVKEDKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPGDITINIGKDAPVPECPIPGERWKDIRHDDTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRSAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDLMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHSAQMSKLTEKIDELQVVLKELKTDLDRVRKGKPPSKSSDGKRKKNLSPEMLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF | 895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed5g0134 | 895 | CDD | Topo_IB_C | 572 | 765 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 329 | 350 | - | - | |
| Aed5g0134 | 895 | Gene3D | DNA Topoisomerase I, domain 2 | 348 | 563 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aed5g0134 | 895 | PANTHER | DNA TOPOISOMERASE I | 132 | 895 | - | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 168 | 187 | - | - | |
| Aed5g0134 | 895 | Coils | Coil | 771 | 798 | - | - | |
| Aed5g0134 | 895 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 841 | 859 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | Coils | Coil | 449 | 469 | - | - | |
| Aed5g0134 | 895 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 566 | 791 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 631 | 645 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 711 | 725 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 653 | 669 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 608 | 627 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 492 | 501 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | PRINTS | Eukaryotic DNA topoisomerase I signature | 848 | 859 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | CDD | Topoisomer_IB_N | 352 | 564 | - | - | |
| Aed5g0134 | 895 | Gene3D | Topoisomerase I; Chain A, domain 3 | 566 | 714 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | SMART | topeu | 492 | 868 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aed5g0134 | 895 | Gene3D | - | 715 | 895 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aed5g0134 | 895 | PANTHER | DNA TOPOISOMERASE I | 132 | 895 | - | - | |
| Aed5g0134 | 895 | SUPERFAMILY | DNA breaking-rejoining enzymes | 566 | 892 | IPR011010 | GO:0003677 | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 1 | 350 | - | - | |
| Aed5g0134 | 895 | Gene3D | - | 368 | 451 | IPR013034 | GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 89 | 118 | - | - | |
| Aed5g0134 | 895 | Pfam | C-terminal topoisomerase domain | 827 | 895 | IPR025834 | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 792 | 816 | - | - | |
| Aed5g0134 | 895 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 352 | 563 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 51 | 82 | - | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - | |
| Aed5g0134 | 895 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 350 | 565 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aed5g0134 | 895 | Coils | Coil | 822 | 842 | - | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 122 | 158 | - | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 291 | 316 | - | - | |
| Aed5g0134 | 895 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed5g0134 | K03163 | - | gmx:100799837 | 1587.01 |