Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0132 ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTACCATTACTCTGATATTATAGAAAAGCTTTCTTATGTAAGTGACTTTGGATCCACACACTATCAGATTGTTCCTACAAAAACTGTAATAGTTGCTAAGAAGTCATCCAACTACACTCCAACATTTCCAGCGCCAAACCCGCAGAATCAGTCCATTAAGGCTCTTAAGGAGCATATTGATGATGCCCCTACCGTTGTGGATCCATGGTTTCAGAGTTGCAACTCCAATGACTTAGAGGTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTACAGAAGTCAATGCTGGAAAAGCAATGGAACCTTTCCTTTGAAAGGGAAGGGCTTACTGAACATTCAAGTAAAGAAAAAAGTTGTAGGAAAGTGACAGTGACTTGTTCTGGGGTGTCTGCGAGGCAAAGAAGAATGAATACCAAGAGGAAGACCACGGTTAAAACTTGTGGTGCTATGCAGCTGAAGTCCAAAATCAGTCCAGAGCTGCTTCAAAACCGTTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGGACTTGCTGTCTCATGCAGAAGTTGTAATCCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGATCATAAATCCAGACTGAAGGAAAGACTAGGATGTGAACCCTCTGATGATCAAATGGCAACTTCATTGAATATTTCTCGCACTGAACTACGAACAAGAATGATAGAGTGCACTCTGGCAAGAGAAAAGTTGGCCATGAGCAACGTTCGCTTAGTTTTGTCTATTGCTCAAAAATATGATAACCTGGGTGCAGAGATGGGTGACCTTGTTCAGGGTGGCTTGATTGGATTACTACGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTCTAATCCGCAATGCAAAGTTTAGACTAGAAGAAAGAGGCATTACTCCAACTATTGATAGGATTGCCAAATACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAATCAGCAAAATTATCTCCCTTGATCGAGAAGCATTCCCCTCTCTGAATGGTCTACAAGGAGAAACTCATCATAGTTATATTGCAGATAATCGAGTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCACTAAAGGACGAAGTGAACAAACTCATAAATGTGACTCTTGTGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTGGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAGAGAAATGGAAGCCATGCTATTGAAACATTAA 1512 0.4054 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYVSDFGSTHYQIVPTKTVIVAKKSSNYTPTFPAPNPQNQSIKALKEHIDDAPTVVDPWFQSCNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREGLTEHSSKEKSCRKVTVTCSGVSARQRRMNTKRKTTVKTCGAMQLKSKISPELLQNRLKGYVKGVVSEDLLSHAEVVILSEKIKVGLSLEDHKSRLKERLGCEPSDDQMATSLNISRTELRTRMIECTLAREKLAMSNVRLVLSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIADNRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0132 503 Pfam Sigma-70 region 3 343 414 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 ProSitePatterns Sigma-70 factors family signature 1. 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 Gene3D - 335 385 IPR036388 -
Aed5g0132 503 Pfam Sigma-70 region 2 266 333 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 Gene3D - 419 497 IPR036388 -
Aed5g0132 503 PRINTS Major sigma-70 factor signature 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 PRINTS Major sigma-70 factor signature 441 453 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 PRINTS Major sigma-70 factor signature 476 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 PRINTS Major sigma-70 factor signature 312 320 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 PRINTS Major sigma-70 factor signature 461 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 187 334 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 260 490 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 336 392 IPR013324 -
Aed5g0132 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 493 IPR013324 -
Aed5g0132 503 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 503 - -
Aed5g0132 503 CDD Sigma70_r4 430 488 - -
Aed5g0132 503 Pfam Sigma-70, region 4 440 489 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aed5g0132 503 Gene3D RNA Polymerase Primary Sigma Factor 68 334 - -
Aed5g0132 503 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0132 Aed-Chr5 974063 979067 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0132 K03086 - gmx:100801884 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0132 5 974063 979067 Aed5g0132 5 974063 979067 ECH