Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0113 ATGGATGGTTACGAAGCTACAAGGATTGTGTTTTCAAGGATCCAAAGCTTGGATCCTGAAAATGCTTCCAAAATCATGGGTGTGCTTCTTCTTCAAGACCATGGTGAAAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTCGTTCACTCTGTGATTGTCAAATCTCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCACCCACACCCTCTACTCCTCCTTCTCCTTCACCTTTCATTTCTAGGCAAAGTTCCACTTCTTCAAGGCTCAGTGGTATCAACATCCCACCGGCTCTCACTATCCCAAACCCTGCTACTTCTGCTTCATGGCCTACTATGTCTGACCTTCAAAACCCAGATGATTTGATGAGTCCCAACCATCTGGTTGTTGGTTCTTCTACTTCTTCATCTTCCTTACCCTTTTATATAAATGGAGGCTCAGATCCAATTGATGAGTTCCAACTTCAAGACCAGCTTTCTTTCCTGAATGATGGTTCTCCTACTAATGCTGCTCTTGCCCACAAGAACAACCCAGATTTGTTTTACCCTAGCAACTCAGACTTGTCTTCAAGTCCTACTAACGGTGCTGACCCTACTCTCTTTCCTTCCTATGGTTGGGGAGGGTCTCTCCACCGCAGGAGTTGCTCAGTCAATGATGCTTGTTTGGCCTCTGAGGACCCTAATTCTGGCTTGGGATGGAAGCCTTGTCTCTACTTTGCTAGAGGGTACTGTAAAAACGGCACCAGTTGCAGGTTCCTTCATGGTGGACTTGGAGACGCTGATGGTGCTGCAATGGTTGGGTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTAAGATCCAAATCTGCTCAGCAACAAAGAATTGCTGCTGCTTCTCAGCTCATGGCCTCTTCTGCTTTTCCATACTCCCCAAAGTGCATGAACTTTCTTTTGCAGCAGCAACAGCAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTACTTTGAACAGTCCTGGTATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAACGAATGTTTGGTTTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTTATACTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCCCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGAAGCAACAGCATGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGTTTAGATGCTAGGGACCAATTTGATCTTCAACTTGGGGGCAGAATGTTCTACAATACACATGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAACTGCAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCGCTGGAAGTCCAATTCCTTCCCCCACCCATTCTCCAAACATGTTCAATCAAAATCTTGTTCCTTCTTTTCACATCAGTTCAGAGGCTCCAAAGGAGAGTTGTTCAATTTCTGCTCCAGCTGGTACTGCATCAGTTTCTGCTGGTCAGCCGGTCAACATTTCTGTTGGCAAGGAAGTGGTGGTCAATGGGGAGAATGGGTATCATGAAGGCAATGGCAAGCAGAGCTCTACTCAAGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGCTCCCTTCTCCAATGGACCTAATGAGGTCACTGATGCAGATGCCTCAGCTGCATCTGTCAACTCCAAATTTGGTACTAGCACATTACTTCCTCCAGCATCAGCTCTTGACATGGGAACGTTCAAATCCTTTAACTGCCAGATTCCAAGGTTCTCTTCCGGCCATGGAACTATTGGTATGTTTGCAGGTACTGGTGGAGCGATTGGTATTTAG 2112 0.4579 MDGYEATRIVFSRIQSLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVIVKSRKELGLPSNSPPTPSTPPSPSPFISRQSSTSSRLSGINIPPALTIPNPATSASWPTMSDLQNPDDLMSPNHLVVGSSTSSSSLPFYINGGSDPIDEFQLQDQLSFLNDGSPTNAALAHKNNPDLFYPSNSDLSSSPTNGADPTLFPSYGWGGSLHRRSCSVNDACLASEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAMVGSPSKIEMMEQCHELLRSKSAQQQRIAAASQLMASSAFPYSPKCMNFLLQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFTLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQHVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTHDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSAGSPIPSPTHSPNMFNQNLVPSFHISSEAPKESCSISAPAGTASVSAGQPVNISVGKEVVVNGENGYHEGNGKQSSTQEDRDLQECLEHNLPDSPFASPTKADGDFMAPFSNGPNEVTDADASAASVNSKFGTSTLLPPASALDMGTFKSFNCQIPRFSSGHGTIGMFAGTGGAIGI 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0113 703 SUPERFAMILY RNA-binding domain, RBD 376 449 IPR035979 GO:0003676
Aed5g0113 703 MobiDBLite consensus disorder prediction 79 97 - -
Aed5g0113 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 691 - -
Aed5g0113 703 SMART rrm1_1 365 435 IPR000504 GO:0003723
Aed5g0113 703 MobiDBLite consensus disorder prediction 61 97 - -
Aed5g0113 703 Gene3D - 213 322 - -
Aed5g0113 703 SUPERFAMILY CCCH zinc finger 234 256 IPR036855 GO:0046872
Aed5g0113 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 440 IPR000504 GO:0003723
Aed5g0113 703 SMART c3hfinal6 233 257 IPR000571 GO:0046872
Aed5g0113 703 MobiDBLite consensus disorder prediction 589 608 - -
Aed5g0113 703 ProSiteProfiles Zinc finger C3H1-type profile. 231 258 IPR000571 GO:0046872
Aed5g0113 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 421 IPR000504 GO:0003723
Aed5g0113 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 256 IPR000571 GO:0046872
Aed5g0113 703 Gene3D - 362 458 IPR012677 -
Aed5g0113 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 691 - -
Aed5g0113 703 CDD RRM_AtC3H46_like 366 435 IPR034365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0113 Aed-Chr5 838483 843837 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0113 - - gmx:100801341 1209.9