Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0058 ATGAGGTCAGCAGCATGTGTTGTCCGTCTCCTGGAAGAATGCTCAAGCATGAGAGAGTTGAAGCAAATCCACGGCCACGCCATCACTCACGGCCTCGCTCGCTTCTCCTTCATCTCGAGCAAACTTCTAGCCTTCTGCGCCCGGCACGATTTCCGCTACGCTCAGACCCTATTCTTCTCTCACATGATCCCTTTTCCAACCCTCTTCGACTACAACACCATCATCTCCGCCACCCTCTTCCGCCAAATGCTAAACCACACCACCGTTCGCCCCAACTCCCGCACCTTCACCCTCCTCCTCTCCAAATCATCACCATCTCTCTCTTTCTCCTTCCTCCAACAGCTCCACTCCCACATCCTCCGACTTGGCCACGCCTACGACCTCTACGTCGTCTCCTCCCTCGTCTCCGCCTACTCCAACCACGGTGCCACATGCGCCGCCCGTCACCTGTTCGACGAAAGTCCTAACAAGAACGTCGCCTGCTATACAAGCCTCCTCACTGGCTACTGCAACAACGGCTTCGTCAACCACGCCAGGGACCTGTTCGACGCTATCCCCCACAAAAACGACGTGTCATATAGTGCTATGGTCTCCGGCTACGTCAAGAACGGTTGTTTCCACGAGGGAATTCAGATTTTCCGCGAACTCAAAAGCTGTGTTGGAAATGTGAAGCCGAATAACTCTCTTCTGGTGAGTGTTCTCAGCGCGTGTGCTGCGGTTGGCGCGTTCGAAGAAGGGAAGTGGATACACTCTTACGTGGACCAAAACTACGAACTTGAGCTGGGAACTGCTTTGATTGATTTCTACACCAAATGCGGATGCGTGGAACCTGCTCAACGGGTGTTCGCGGACATGAAAAACAAAGACGTGGCTGCGTGGAGCGCTATGATATTGGGCTTCGCTATTAACGGTAAGAATCGCGAGGCCCTTGAGCTGTTTGCGGAGATGGAGAAGCTGGGCCCCAGGCCCAATGGGGTTACTTTCATCGGCGTTCTCACCGCGTGCAATAACAAAGACTTGTTTGGTAGAGCGCTTGAGTTGTTCAGATACATGACTGAAGAATACGGGATAGTGGCGTGGATAGAGCACTATGGGATTGTGGTTGATGTGTTGGCTCGGAGTGGGGAAATCGAAGAGGCGTTGGGGTTTATTAAGAGCATGAGAATGAGCATGGAACCCGACGGAGCCATATGGGGGTGTTTGCTTAATGGGTGCTTGTTGCACGGTTACATTGAGTTGGGAGAGAAAATTGGGAAATATTTGATTGAGTTAGAGGGTAGGCAGAGTGGAAGGTACGTCGTTTTGGCCAACGTGTATGCGAGTGTTGGGAGGTGGGAGGGCGTTATGGAGACGAGGAAATTGATGAAAGACAGAGGAGTGGCTGCCGTTTCTGCTTTGAGTTTCATAGAGATTCATCAAACCGTTCACAACACTCTGCTTCCTATTTCGGAGAATCGTATCCACTGTTAA 1470 0.5184 MRSAACVVRLLEECSSMRELKQIHGHAITHGLARFSFISSKLLAFCARHDFRYAQTLFFSHMIPFPTLFDYNTIISATLFRQMLNHTTVRPNSRTFTLLLSKSSPSLSFSFLQQLHSHILRLGHAYDLYVVSSLVSAYSNHGATCAARHLFDESPNKNVACYTSLLTGYCNNGFVNHARDLFDAIPHKNDVSYSAMVSGYVKNGCFHEGIQIFRELKSCVGNVKPNNSLLVSVLSACAAVGAFEEGKWIHSYVDQNYELELGTALIDFYTKCGCVEPAQRVFADMKNKDVAAWSAMILGFAINGKNREALELFAEMEKLGPRPNGVTFIGVLTACNNKDLFGRALELFRYMTEEYGIVAWIEHYGIVVDVLARSGEIEEALGFIKSMRMSMEPDGAIWGCLLNGCLLHGYIELGEKIGKYLIELEGRQSGRYVVLANVYASVGRWEGVMETRKLMKDRGVAAVSALSFIEIHQTVHNTLLPISENRIHC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0058 489 Pfam PPR repeat 191 218 IPR002885 -
Aed5g0058 489 Pfam PPR repeat 161 184 IPR002885 -
Aed5g0058 489 Pfam PPR repeat 363 388 IPR002885 -
Aed5g0058 489 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 3 480 - -
Aed5g0058 489 Gene3D Tetratricopeptide repeat domain 261 473 IPR011990 GO:0005515
Aed5g0058 489 Pfam PPR repeat family 288 335 IPR002885 -
Aed5g0058 489 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 480 - -
Aed5g0058 489 Gene3D Tetratricopeptide repeat domain 3 153 IPR011990 GO:0005515
Aed5g0058 489 Gene3D Tetratricopeptide repeat domain 154 260 IPR011990 GO:0005515
Aed5g0058 489 Pfam E motif 410 463 IPR046848 -
Aed5g0058 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 219 IPR002885 -
Aed5g0058 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 188 IPR002885 -
Aed5g0058 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Aed5g0058 489 TIGRFAM PPR: pentatricopeptide repeat domain 161 184 IPR002885 -
Aed5g0058 489 TIGRFAM PPR: pentatricopeptide repeat domain 191 219 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0058 Aed-Chr5 431260 432729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0058 158 476 Glycoside Hydrolase AT3G49170 31.366 2.26e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0058 - - gmx:106795222 692.96