Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0050 ATGCAAAGGTTGTTAATATTGTTTATAAGTACAATATTGTTGGCAGTAGCTGGTACTGTAACAACGGCTAGTTTGAAGCATAACTATGGAGAAGCTTTGTCAAAGAGCATATTGTTCTTTGAAGGACAGAGGTCAGGGAAGTTGCCACCAACACAGAGGATGATTTGGAGGAAGGATTCTGCGCTTCAAGATGTCTATATAGTTCCCGTTCCTGACGATTATGCTACACACTTTCCTAGGCCTTCCCCGCTTCTTCGTAAAGTTGAGTTGGTTGGTGGTTACTACGACGCTGGTGACAACGTGAAATTCAACTTTCCGATGGCATTTTCAACAACGATGCTGGCATGGAGTGTAATAGAGTTCGGGAAATTGATGGGTCCGGAGCTTAAACATGCGGTAGACGCTATTCGTTGGGGCACGGAGTATTTCATGAAAGCCACAAGCGTCCCCGGGTTTGTGTTCGCACAAGTTGGGGACCCATATTCTGATCACAATTGCTGGGAGAGACCTGAAGACATGGACACTCCCAGAACTGCCTTTGCTGTTACCAGAGACTTCCCTGGCTCTGAAGTTTCAGCAGAGATTGCAGCAGCACTTGCAGCCTCTTCTATTGTATTCAGAAAATATCACACTACTGCTTATTCTACAACACTTCTCCAAAGGGCTATACATGTTTTTGAGTTTGCAGATAAGTACAGAGGATCATACAATGACAGCCTCGGATCCTGGGTGTGTCCATTCTATTGTGATTTTAGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTCAAGGCTACTAGACGCCCTTACTACTTAGATTACATTGACAACAACATTCATAATCTTCAAAACTTTGCTGAATTTGGATGGGACTCCAAGGACGCTGGCATCAACGTGCTCCTTTCTAAGCTTCTAATTAATAGTAGCTCTAATTCTAAGGCTTTCATCATGAATAATGCGGACAAGTTTGTCTGTGCTGTGCTACCTGAATCACCTTCAGTATCAGTCTCATACTCTCCAGGTGGGCTTCTATTCAAGCCTGGGGGGAGTAACATGCAGCATGCAACAGCAATCTCATTTCTGTTTCTGGTTTATGCTGGCTATTTGAAGAAGACAAATAGAGAGATTGACTGCGGCGGTAAAGTTATTGTTTCTCCAAAGCGACTTAAACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGGAGCAATCCAGTGAATATGTCATACATGGTAGGATACGGAGCAAAATATCCAGAAAGAATACATCATCGTGCGTCGTCATTGCCATCGGTGGATGATGACCCTGGGCACATTAATATTGGGTGCAAAGGAGGATCATTTTATTTTGACACCCAAAATCCAAACCCCAACTTGCTTCTAGGAGCTGTTGTGGGTGGCCCTGATATCAATGATTCATACGCAGATTCTCGAGCTGATTTTGTACACTCTGAACCTACAACATACATCAATGCACCCCTTGTCGGTGTTTTGGCTTACTTCAATTCACATCCATCCTAA 1530 0.4392 MQRLLILFISTILLAVAGTVTTASLKHNYGEALSKSILFFEGQRSGKLPPTQRMIWRKDSALQDVYIVPVPDDYATHFPRPSPLLRKVELVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKLMGPELKHAVDAIRWGTEYFMKATSVPGFVFAQVGDPYSDHNCWERPEDMDTPRTAFAVTRDFPGSEVSAEIAAALAASSIVFRKYHTTAYSTTLLQRAIHVFEFADKYRGSYNDSLGSWVCPFYCDFSGYQDELVWGAAWLFKATRRPYYLDYIDNNIHNLQNFAEFGWDSKDAGINVLLSKLLINSSSNSKAFIMNNADKFVCAVLPESPSVSVSYSPGGLLFKPGGSNMQHATAISFLFLVYAGYLKKTNREIDCGGKVIVSPKRLKQIARGQVDYILGSNPVNMSYMVGYGAKYPERIHHRASSLPSVDDDPGHINIGCKGGSFYFDTQNPNPNLLLGAVVGGPDINDSYADSRADFVHSEPTTYINAPLVGVLAYFNSHPS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0050 509 SUPERFAMILY Six-hairpin glycosidases 20 507 IPR008928 GO:0005975
Aed5g0050 509 PANTHER ENDOGLUCANASE 12 508 - -
Aed5g0050 509 Gene3D - 23 509 IPR012341 GO:0005975
Aed5g0050 509 PANTHER ENDO-1,4-BETA-GLUCANASE 12 508 - -
Aed5g0050 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 477 495 IPR033126 -
Aed5g0050 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 402 428 IPR018221 -
Aed5g0050 509 Pfam Glycosyl hydrolase family 9 29 501 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0050 Aed-Chr5 384726 387046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0050 1 507 Glycoside Hydrolase AT1G70710 56.863 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0050 K01179 - gmx:100775752 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0050 5 384726 387046 Aed5g0050 5 384726 387046 ECH