Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0027 ATGGCACCTTTTCTCCTTAATCACTCCTTCTTCTTCATTTTCCTTTTTTGTCTTCCAGCCATAAACACACTCTCCACTGTTTCCATTTCTGAAATATCCAATTCCAACCAAACATTAATTTGTGTCCTTCAACATCCAAACCAACAAGGACAATCAAATCTGAACTGTACCAGCTTCCCTCAGGCTGAGGCTATTACACTTGATGTGAATCCCAATGTTTCCTACTCTCAGATTGTGGGCGGCAACGGGTTTGTATGTGCTTTAGGGCCATCATCCGCTTCCATCTCCATCATGGGTTGTTGGAGATTCTCTGCCAATGCTACTAATGTTCCTTATAAACGCATCTACCGTGGAGCCGTTGTGGAAGATATTGACAGTAGCAACTCCCACGTCTGTGGACTTGTAAGAAAAGGAAATAATAGCCTTGAGCTTGAGCTTGAGTGTTGGCAATGGCATGGCTTCAATTCAAGCATGTCCATGTCAAGTGTTGCCGTAGGAGAGAATTTCGTATGTGGCTTATCACAAAGGGGGGACGTCAATTGCAGCGGTAATGGTAGTAGTAGAGTTGTTGTTGATGTCCCTGAGCCCGGTGGGAATTACAGTTTTCTGGCAGCTGGGTTTAGGCATGCTTGTGTGATCTCTGGCGATGGTAGCTTGCATTGTTGGGGAGACATGGAGGGTGAGAAGCCACAAGGGACCTTCATTTCTTTGGCGTTGGGAGACAACCGAAGTTGTGCACTTGGCCAAGACAGAAGAGTTGTGTGTTGGGGGTCCAATAATTTCACCATGCCACAAAGATTGCAAGCCACTTTTTTCGAATCAATTGTGGCAAAGAGAACTGTTTTCTGTGGAGTCGTGTCTAGTAATTATTCCTTATTATGCTGGGATTCCCAAATAGACAAGGTGTTTGACGATGTCCTCCCAGGACCTTGTCGGAACGATTGTCCATGTGGGCCCTTGTCAAATTCTGCCAAACTATGTAACTCTCCTGGCGCCGTAATTTGTCAACCTTGTTCACCTTCCCCCAAAGCAAACAACAACAATAGTGGTTGGAGTTGGAGCAGGAAAATGGTGGCATTTCTAGTGGTTGGATGTGTGGGTTGCAGTTCCCTCTTGCTAGTCATGGCATTCTTCCTTTACAGGTACTGCAACTCCAAACGCAGAGGAAGCCGTGTTCACGACGACTCTGGGCGGTTAGATGAAGAGTCGTTCCACACCCACCCACAAACACTTGAGAAACGGTTGAGCCACGTGATCAGCATGGGGAATGGGAGCCCCTCTTTGGAGGAGTTTTCCCTTGAGACATTGGTTAAAGTGACCAACAATTTCTGCCAAGACAATAGGATTGGGATTGGAAGCTTCGGCGCAGTGTATCATGCAACGCTAGAGGACGGCAAAGAGGTTGCTATAAAAAGAGCGGAGGTCTCCTCCTCCAGCTACACAATATTGGATGAGATTCACAGAGTTTTGGACAAGAGACTTCCCCCACCCACACCCTTTGAAATAGAGGCTGTAACCTATGTCGGTTATTTGGCTGCAGATTGTGTTAGGCTAGAAGGTCGAGATAGACCAAATATGTCTCAAGTTGTAAATAACTTGGAAACAGCATTGGCTGCATCTTTAGCCAAACCAATACTCTCTAGGTCCACCAGTCATTCTATTTCTTCACAATAA 1674 0.4594 MAPFLLNHSFFFIFLFCLPAINTLSTVSISEISNSNQTLICVLQHPNQQGQSNLNCTSFPQAEAITLDVNPNVSYSQIVGGNGFVCALGPSSASISIMGCWRFSANATNVPYKRIYRGAVVEDIDSSNSHVCGLVRKGNNSLELELECWQWHGFNSSMSMSSVAVGENFVCGLSQRGDVNCSGNGSSRVVVDVPEPGGNYSFLAAGFRHACVISGDGSLHCWGDMEGEKPQGTFISLALGDNRSCALGQDRRVVCWGSNNFTMPQRLQATFFESIVAKRTVFCGVVSSNYSLLCWDSQIDKVFDDVLPGPCRNDCPCGPLSNSAKLCNSPGAVICQPCSPSPKANNNNSGWSWSRKMVAFLVVGCVGCSSLLLVMAFFLYRYCNSKRRGSRVHDDSGRLDEESFHTHPQTLEKRLSHVISMGNGSPSLEEFSLETLVKVTNNFCQDNRIGIGSFGAVYHATLEDGKEVAIKRAEVSSSSYTILDEIHRVLDKRLPPPTPFEIEAVTYVGYLAADCVRLEGRDRPNMSQVVNNLETALAASLAKPILSRSTSHSISSQ 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0027 557 SUPERFAMILY RCC1/BLIP-II 66 297 IPR009091 -
Aed5g0027 557 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 483 540 IPR044815 GO:0004674
Aed5g0027 557 Gene3D Phosphorylase Kinase; domain 1 416 490 - -
Aed5g0027 557 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 20 476 IPR044815 GO:0004674
Aed5g0027 557 PANTHER OJ000114_01.11 PROTEIN 20 476 - -
Aed5g0027 557 PANTHER OJ000114_01.11 PROTEIN 483 540 - -
Aed5g0027 557 Gene3D - 100 309 IPR009091 -
Aed5g0027 557 SUPERFAMILY Protein kinase-like (PK-like) 419 479 IPR011009 -
Aed5g0027 557 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Aed5g0027 557 Pfam Regulator of chromosome condensation (RCC1) repeat 235 261 - -
Aed5g0027 557 Pfam Regulator of chromosome condensation (RCC1) repeat 203 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0027 Aed-Chr5 258358 260616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0027 480 552 Receptor kinase-like Gene Family AT5G47850 56.579 9.73e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0027 - - gmx:100305418 792.727