Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0019 ATGGCTGAAAATGATTCAAACCCTACTCCAGCCGCTACACCGCCTCCGCCGGAAGTCATTGCTGAGACCAAAGACCTAACGCCTCCTCCTCCGCCGCCATCTGAGGATGTGGTTGAAGACAACAAGGTTAAAGCTGATGAGGAGGAGGCCGTTGTTGTGGTTCAAGACATCCACAAAGACAAAGAAGAAGTAGAAGTAAAAGCCGAGGCGGCGGCAGCAGTCGTGGTTGAAGTTAAAGAGAAAGAAGAGGAAGAGGAGAGGGAGAGCGATTCATTGAAGGAGGAGAGCAATAGGGTTTCTGATTCGGAGAGGAATGGCATTGAAGAGCTAAAGAAGCTCCTCAAAGAGGATTTGGAAGGCAAGGAGGAGGAGGTTTCCATCTGGGGCGTCCCTCTCTTGAAGGACGAAAGGACTGACGTGATTCTTCTCAAGTTTCTTAGAGCGCGGGAGCTGAAAGTGAAGGACGCTCTTGTCATGATTCAGAACACTCTCAGATGGAGGAAGGACTTCAACATCGACGCTCTTTTGGATGAAGATCTGGGCGATCACTTCGACAAGGTCGTCTTCATGCACGGACACGGCAGAGAGGCCCATCCCGTCTGTTACAACGTCTACGGAGAGTTCCAGAACAAGGATCTCTATCACAAGGCCTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGGATTCAGTTGTTGGAGCGCAGTATTAGGAACAACCTCGACTTCTCTCCTGCCGCTGGCATCAACACCATTTTCCAAGTGAATGACCTCAAAAACTCTCCCGGCCCTGCTAAACGTGACCTTCGCCTTGTTACCAAACAAGCTCTGCAGTTGCTTCAGGACAACTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCCTGGTGGTATCTTGCTTTCTATACCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAGCAAATTTGTCTTTGCTGGACCAGCCAAGTCTCCCGATACTCTCTTCAAGTATATTTCTCCCGAGCAAGTTCCTGTTCAATATGGCGGCCTCAGTGTAGATTTCTGTGACTGCAATCCCGATTTCACTATGTCTGATCCTGTCACCGAAATTCGTATAAAGCCAACCACTAAGCAAACTGTTGAAATCGCTATTTATGAGAAATGCATTATTGTTTGGGAGCTGCGTGTGGTGGGCTGGGAGGTTAGCTACAATGCTGAATTCAAGCCTGATGCTAAAGATGCATATACAGTTATCATACACAAGGCCACAAAGATGTCCCCTACCGATGAACCTGTTGTTTCCAATAGCTTTAAAGTTGGTGAACTGGGAAAATTGTTGCTCACTATAGACAATCCTACCGTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGCTCAAACCCTACTGTGATTAA 1410 0.4745 MAENDSNPTPAATPPPPEVIAETKDLTPPPPPPSEDVVEDNKVKADEEEAVVVVQDIHKDKEEVEVKAEAAAAVVVEVKEKEEEEERESDSLKEESNRVSDSERNGIEELKKLLKEDLEGKEEEVSIWGVPLLKDERTDVILLKFLRARELKVKDALVMIQNTLRWRKDFNIDALLDEDLGDHFDKVVFMHGHGREAHPVCYNVYGEFQNKDLYHKAFSTEENRTKFLRWRIQLLERSIRNNLDFSPAAGINTIFQVNDLKNSPGPAKRDLRLVTKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPAKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIRIKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDAKDAYTVIIHKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTVKKKRLLYRFKLKPYCD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0019 469 SUPERFAMILY CRAL/TRIO domain 187 356 IPR036865 -
Aed5g0019 469 CDD SEC14 177 349 IPR001251 -
Aed5g0019 469 PANTHER PATELLIN-3 36 469 - -
Aed5g0019 469 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 177 348 IPR001251 -
Aed5g0019 469 Coils Coil 68 98 - -
Aed5g0019 469 ProSiteProfiles GOLD domain profile. 359 464 IPR009038 -
Aed5g0019 469 MobiDBLite consensus disorder prediction 9 36 - -
Aed5g0019 469 Pfam CRAL/TRIO, N-terminal domain 108 162 IPR011074 -
Aed5g0019 469 MobiDBLite consensus disorder prediction 79 103 - -
Aed5g0019 469 SUPERFAMILY CRAL/TRIO N-terminal domain 90 179 IPR036273 -
Aed5g0019 469 PANTHER PATELLIN-1 36 469 IPR044834 GO:0008289
Aed5g0019 469 Coils Coil 104 124 - -
Aed5g0019 469 SMART sec14_4 182 351 IPR001251 -
Aed5g0019 469 Pfam CRAL/TRIO domain 186 348 IPR001251 -
Aed5g0019 469 Gene3D - 92 383 IPR036865 -
Aed5g0019 469 MobiDBLite consensus disorder prediction 1 44 - -
Aed5g0019 469 SMART CRAL_TRIO_N_2 138 163 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0019 Aed-Chr5 188594 191446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0019 142 343 Acyl Lipid Metabolism Gene Families AT1G55840 29.032 4.84e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0019 - - gmx:100804006 689.878