Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0018 ATGGCCGAGGAGCCCCAAAAACCAGCTTCCGCTGAAGAAGTGGTAGTGGTGCCTGTTCCCGCGGACAACCCACCAACTACCCAAGCTGAAGCTGAAGAGAAAACACCAACCACCGAAACTGAACTTGAAGAGAAGCTAGCAGCAGCTGAAGGTGAATTGAAAGAAGTGGTGGCTGAAGCAGATAAGGCCCAGAGCGGTGCGGAAGACAAGATTTCCCAATCAGTTTCGTTCAAGGAGGAGACCAACGTGGTTGGCGACCTCCCCGAGACCCAGAAGAAAGCCCTCGATGACCTCAAGAAGCTTGTTCAAGAAGCCCTTAACAACCACGACCTAGCTGCTCCCAAGCCCGAACCAGAGAAGAAGAAACAACCTGAGAAGAAGGAAGAAGAAGCAGTAGTAGTGGTCAAAGAAGAGAAGAAAGAAACCGAAGTGGCAGAAGAGAAGAAGGAGGAAACTGAAGTGACAGAAGAGAAGAAGGAGGTTGAGGCGGCGACGGAGGTGAAGAAGGAAGAAACTGAAGTGGCAGAAGAGAAGAAGGAAGCTGAAGTCATAGAAGAGAAGAAGGAGGAAACTGAAGTGGCAGAAGAGAAGAAGGAAGCTGAAGTCATAGAAGAGAAGAAGGAGGAAACTGAAGTGACAGAAGAGAAGAAGGAAGAAACTGAAGCGGCAGAAGAGAAGAAGGAAGCTGAAGTGACAGAAGAGAAGAAGGAATTAGAGGAGGAAAAAGGTTCATCGGTTCCTGCTAGTCCAGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGACGAGAGGAGCGACGTGGTTCTGCTAAAGTTTCTTAGGGCTCGGGATTTCAAGGTGAAGGAGGCCTTCAACATGCTGAGAAACACGGTGCGTTGGCGAAAGGAATTTGGAATCGACGCTCTGATCCTGGAAGATCTTGGAAGTGACTGGGACAAGGTGGTGTTCACTCATGGATACGACAAACAAGGGCACCCGGTTTACTACAACGTGTTTGGCGAGTTCGAGGATAAGGAGTTGTACAACAAGAGCTTTTCCGATGAGGAGAAACGCAACAAGTTCATAAGGTGGAGGATTCAGTCGTTGGAGAAGAGTGTGAGAAGCCTTGACTTTTCTGTATCTAGTATCTCAACGATAGTCCAGGTGAACGACCTTAAAAACTCCCCTGGTCTCGGGAAGAGGGAACTGAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCGGAGTTTGTTGCCAAACAGGTATTCATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCCTTCTTCACTCAGAGGACCAAGAGCAAATTTGTATTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCAAATATATTGCTCCGGAGCTTGTGCCTGTTCAATATGGTGGACTGAGCAGAGAGGGTGAACAGGAATTTACCACTGCTGATCCTGTTACGGAGGTTACAATTAAACCTGCAACTAAGCATGCTGTTGAGTTCCCAATCTCTGAGAAAAGCCACCTTTTTTGGGAAATCCGAGTTGTGGGGTGGGATGTGAACTATGGAGCTGAATTTGTGCCCAGCGCTGAGGATGGATACACTGTGATAGTACACAAGAGCAGGAAAATTGGTCCCGCTGATGAGACCGTAATCACTGGCGCTTTCAAAACTGGTGAAGCTGGCAAGGTTGTACTCACCATAGATAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAACCCATCCCAGACCACTAG 1782 0.4832 MAEEPQKPASAEEVVVVPVPADNPPTTQAEAEEKTPTTETELEEKLAAAEGELKEVVAEADKAQSGAEDKISQSVSFKEETNVVGDLPETQKKALDDLKKLVQEALNNHDLAAPKPEPEKKKQPEKKEEEAVVVVKEEKKETEVAEEKKEETEVTEEKKEVEAATEVKKEETEVAEEKKEAEVIEEKKEETEVAEEKKEAEVIEEKKEETEVTEEKKEETEAAEEKKEAEVTEEKKELEEEKGSSVPASPEEVEIWGIPLLADERSDVVLLKFLRARDFKVKEAFNMLRNTVRWRKEFGIDALILEDLGSDWDKVVFTHGYDKQGHPVYYNVFGEFEDKELYNKSFSDEEKRNKFIRWRIQSLEKSVRSLDFSVSSISTIVQVNDLKNSPGLGKRELRQATNQALQLLQDNYPEFVAKQVFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPVTEVTIKPATKHAVEFPISEKSHLFWEIRVVGWDVNYGAEFVPSAEDGYTVIVHKSRKIGPADETVITGAFKTGEAGKVVLTIDNQTSKKKKLLYRSKTKPIPDH 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0018 593 SMART CRAL_TRIO_N_2 266 291 IPR011074 -
Aed5g0018 593 SMART sec14_4 309 477 IPR001251 -
Aed5g0018 593 MobiDBLite consensus disorder prediction 1 42 - -
Aed5g0018 593 PANTHER PATELLIN-LIKE PROTEIN 1 592 - -
Aed5g0018 593 Coils Coil 135 244 - -
Aed5g0018 593 Pfam CRAL/TRIO domain 314 474 IPR001251 -
Aed5g0018 593 Gene3D - 314 492 IPR036865 -
Aed5g0018 593 MobiDBLite consensus disorder prediction 105 248 - -
Aed5g0018 593 MobiDBLite consensus disorder prediction 58 83 - -
Aed5g0018 593 PANTHER PATELLIN-1 1 592 IPR044834 GO:0008289
Aed5g0018 593 Coils Coil 39 66 - -
Aed5g0018 593 SUPERFAMILY CRAL/TRIO N-terminal domain 75 306 IPR036273 -
Aed5g0018 593 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 319 480 IPR001251 -
Aed5g0018 593 Gene3D GOLD domain 493 587 - -
Aed5g0018 593 ProSiteProfiles GOLD domain profile. 456 587 IPR009038 -
Aed5g0018 593 CDD SEC14 311 475 IPR001251 -
Aed5g0018 593 PRINTS Cellular retinaldehyde-binding protein signature 466 475 - -
Aed5g0018 593 PRINTS Cellular retinaldehyde-binding protein signature 269 291 - -
Aed5g0018 593 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 489 584 IPR036598 -
Aed5g0018 593 MobiDBLite consensus disorder prediction 113 247 - -
Aed5g0018 593 SUPERFAMILY CRAL/TRIO domain 315 476 IPR036865 -
Aed5g0018 593 Gene3D - 216 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0018 Aed-Chr5 175622 178049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0018 270 469 Acyl Lipid Metabolism Gene Families AT1G55840 29.767 2.08e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0018 - K19996 gmx:100806382 636.721