Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0013 GTTAATTGTAATTTTGTGATTTTACAAATACTGAATTGTTTGGATTGGTACCATAAGAAAATAGGTTTTGTTGGGCGAGCGGAGAGAAGAGAAGAGGAGATGGAGGACATTGAGGATTTGCTGATTGGAAGCAGAAGTGCAACTCCACCTGGCTTTCGTTTGCCATTAGCAGCGGGTGTTGGCGTTGGGACAAAGCGGAATCAACTATCTTCTTATTCTTCTTCACCTGCAATCCCAGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGTCAGCTTGCGGCTTTTGGTTATTCATTGAGCGATAATCCTGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAGTCCCCGAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCAAACAAACCACTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAGATTTGAAAGAGCTTGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTCATCGTGTTGTTGAAATTGTAGAGGAGACTTTAAAAGGTCATGAAGTGCGCCTTTTGACCCGCAAGAATTTGCCAGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTACCTATCAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATTGATAGCCTTGTTGGGCGTGTAAAATCCGTCATATCTGAAGGGGTTAAGGAGATTTGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGTGTCAATCTTCCAACTTTATTGAATGCCTTAGTAGCAGAACTACCAGCTGATGCAAGCACAATGTTGCGTATTGGAATGACCAATCCACCATATATCCTTGAACACTTGAAAGAGATTGCAGAGATTTTGCGGCACCCATGTGTTTACTCTTTTCTGCATGTACCAGTTCAATCTGGAAGTGATACTGTTTTGAGTGCAATGAATCGAGAATATACTGTGGGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGCGGATTTCCTGGTGAAACTGATGAAGATTTTGTTCAAACTATCAACCTTATTAAAGAGTACAAGTTCCCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAAAGAAGAAGCCGTGAACTGACAAATGTCTTTGAATCCTTCACACCATACTCTGGGATGGAAGGCAGAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCACTTGGTTGGTCATACAAAAGGATATATACAAGTTCTTGTAAATACTCCAAACCATATGCTGGGAACTTCAGCTATGGTTAAGATAACATCTGTGGGAAGGTGGTCAGTTTTTGGGGAAGTAATTGAGACAGTCAACCATGTAAGTGACAATAAAGCTCTAAACAAGCTGGTGGATTTGCCTTCTCTGTGCGGTAACCCAGCCAAGACTGGTGGATTCTCAAAAGAGCCAGAATCTTGTGCCTGTGGAAATGACATCTGTTGTGATCAGGGTACTCTTGAAAATAGTGATAATTCAAGAGGCAGTGTAGTGCCACAGAATCAAAGTAAAAGAAATTTCATTGGATGGATGCTGAGGAAGCGGGAGCATCTGCACAAAAGGGTTGAGAGTGATCTTGCCTCGGGATCTTTTAAAAAGCAAGAAAGAAGCATGAGGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTGACGATTATTGCTCTAGTAGTAGCTGTTATCTTTAGAGTTATTTGGTCCCAATAA 1932 0.4203 VNCNFVILQILNCLDWYHKKIGFVGRAERREEEMEDIEDLLIGSRSATPPGFRLPLAAGVGVGTKRNQLSSYSSSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLAAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIHRVVEIVEETLKGHEVRLLTRKNLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLSAMNREYTVGEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTINLIKEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGRVERIWITDIASDGVHLVGHTKGYIQVLVNTPNHMLGTSAMVKITSVGRWSVFGEVIETVNHVSDNKALNKLVDLPSLCGNPAKTGGFSKEPESCACGNDICCDQGTLENSDNSRGSVVPQNQSKRNFIGWMLRKREHLHKRVESDLASGSFKKQERSMRKWDFVDKVLLGGISISILTIIALVVAVIFRVIWSQ 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0013 643 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 83 500 IPR005839 GO:0006400|GO:0016740|GO:0051539
Aed5g0013 643 SMART MiaB 215 439 IPR006638 GO:0003824|GO:0051536
Aed5g0013 643 SFLD B12-binding domain containing 161 429 - -
Aed5g0013 643 Gene3D - 83 202 IPR038135 -
Aed5g0013 643 Pfam Radical SAM superfamily 222 394 IPR007197 GO:0003824|GO:0051536
Aed5g0013 643 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 84 505 IPR006466 GO:0035598|GO:0035600
Aed5g0013 643 ProSiteProfiles Radical SAM core domain profile. 211 444 IPR007197 GO:0003824|GO:0051536
Aed5g0013 643 CDD Radical_SAM 219 423 - -
Aed5g0013 643 ProSitePatterns Methylthiotransferase radical SAM domain signature. 219 239 IPR020612 GO:0051539
Aed5g0013 643 PANTHER RADICAL SAM PROTEINS 34 535 - -
Aed5g0013 643 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 82 190 IPR013848 GO:0035596|GO:0051539
Aed5g0013 643 ProSiteProfiles TRAM domain profile. 444 506 IPR002792 -
Aed5g0013 643 Gene3D tm_1862 like domain 213 443 IPR023404 -
Aed5g0013 643 SUPERFAMILY Radical SAM enzymes 205 439 - -
Aed5g0013 643 SFLD Radical SAM 161 429 IPR007197 GO:0003824|GO:0051536
Aed5g0013 643 Pfam Uncharacterized protein family UPF0004 84 162 IPR013848 GO:0035596|GO:0051539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0013 K15865 - gmx:100798865 1103.2