Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0004 ATGACATCCAATAATCCTCATGAGATCATGGACGATGAGGGATTTGACTGGGAAGCAGCTGCTAGAGAAATCGATGTGGTTTGCCAGATGACAAGTGACGCAAAGGGAAAGGTTTATGAGAAGAGAAAGCAGCAATCCACTCTCGATAAGTTCGTGTCAGTTGCCATTGCCAAGAAGGAAACCCCACCACCGCAGTTCCCAGAAGATGACCAAAGCCCTACTTTCGTCCACCCCATTGACGTCGAGGCGGCCAAAACATGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTTGATATTACCCAGTCCGCACTCTTCTCAAACACATTGGTGGCCTTGCCAACGGGGCTTGGCAAAACACTCATTGCCGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATAGAAGCATGCCACAATATCGTGGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTTAGTCCGCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTCTGGTGATCGATGAAGCTCATAGAGCAATGGGGAATTATGCTTATTGTGAAGCAGTTCGCGAGCAACAGACAGTCCAGGCTGTCATTGATAATCTGCATATCTCCAGACTTGAATATCGCAGTGAAACTGACCATGACGTTATCTCATATGTTCACAATAGGAAAATAGAATTGATACAGAGATCTTTGTTGCAATATTACCAGGTTGCAATGGGCCCAGAAGCTGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCCAGGCTTACAAATATCGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGTCAACGGCTTAGGCAAGATCTTTCTCATGTCAACTGTGAAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATTCATAAGTTACTCTCAAGTCACGGAATAAGGCCAGCATGTGAGATGCTTGAGAGAAAACTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAAAGTTTGTCTCACGGAGCATCTAGTCCAAAATTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGGAGATATTGGAGAAATAGTCAAAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTTCTGAAGGTATGTATTCTGTTTGGTACAAGATTCATACTCCTTCCATGTACTTACATGGTTCATCAACAGAAATTTCGGACTGGTGCCTATAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAATTCCTCATGTCCTTAAACCAGAAGTTCAATATGTTGAGCTGTCCATTGAGAAATTTATTCCTCGTCAAAAGAATGTAAAAGACGATGAGCTCCACATTTCTCCATCAAAGGACAAACTCACTGTTTCTGAAATTGAATTACTTGAAACTTATTTTCACCCTACTGGGGAAAACAATTGTAGAATGTCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTCTGGAACGTTGATGCTTATAGACATGATGCAGCGTTTGCAAGGATTAGTATCAATTCCAGAAGATGACAAAATTTATTCACTTCAGGAAGATTTGTGTTTGGGACATAGTAAGCCAGTCACCACTACCAAACTTGATGAAGCTAAAAAGGACAATGAATCATGCTCTAGACATAAAATTCAAAAGAATGTGGCCTCTGTTAATTGTCTGGAGCTGGATTCGTATCATTTGGGGATTCAAAGCAAAGACTTCGTTGATCTAACTCTACAAGATGGTACTTTCTGTGACCTGGGTAAAAATCAAGTGGAAGCATGTGAGGGTGATGAGACAATTCCCGAAACTCCAATTGCTAAGAGAAGTTTGTCAAATGAAGGAGATAATGCTGGTCAAATGGTAAATCTTGTGGAGATTGAGACTTCTTCATTGGTTGCAGATGCTTGCATTGATGGCATGAGAGATGAAGAACTTAGTCCACGTTTAACTAATTTGATTAGAAGTGGTGTTGTTCCAGAGTCTCCCGTTGATGAAAGAGGGAAATTAAGATACAATTCTGTCATACGTGACTGTATGTTGCCTGTTCTTCCGCACAAAGAACAGGATGCTAGTTCTTTAAGATCTAGGGTAACTAAAGAGGTCATCCTTGATAGGGGCACCGATAAGAATGTCTGTACTTCTGCCATTAATGAAACAAAAAGCCCTTTACTTGACCTGAAGAATTGTGCAATTAGAAGAGGACGAGTCTTCCTTTCTCAAACTGAGGAAGGCCATACACATAAGACTGACCCAAGCTTCAGTGAAGAAGCACTTCCTACAGCTTGTGGTGAAATGTCTGAAAGCATTAAACCTGCACGCAAATTTAAAAGGTTGCGGAAAGCTGAAGATACTGAAAGTAATATGAATCAGAAAAACAATAAACTCTTTGCTTCAACAGCAATCTTTCTCAAATCAACTTCTGCCTCCCATCCTGCACAATATAAGCATGGCCAAGGTAAAAGGAAATCAACACACAATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGACGAGGATGGCAATTCATTTGACAGTTTCATAGATGACAGGACTAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATTGACATGATGGCAATTTACAGGCGCTCTTTGCTCAGTCAAACACCAAGTAATGGGGGGCTTGATTTTTCTGCCACCTTTACTCCTGACCGTTTGACTATGGCAGTCCGTATTAGTGAAAGTGGGGATTCTTCAGGGAAGACAGTGAATCATTTCAACACAGAGCCAACCAAACTGTCAGCAAATCGGACTTTGGAATCTGTTAGTATTGACCAGATAACCTCAGAAGCAATGCCTCTAACTTGTTCTCCTACGGGAACTGGGACAGAGACAAGAAGTCGCAAACGAAGATTGACATTTTACCATTCAGGACACTTCCCAAATGTGAACCTAGAACGAGAATTTGCACTTCAATCAAAGAAAGTAGTGGATGCCGATGCAACTACCGATGTTCTATGTGATGATCAATTTTATAATGACCTTGATCTTGACGAGTTGGAGGCGCAAGCAACTTTGCTTCTAAAACAGAAATTAGATTTGACAATTCAGAAGCAAGATACGGTCCCTCAGTCTCACACATCCAATCTTGATATTTTTCAGTCTCCATCATTTGACCTTGGGATTTGA 3666 0.4075 MTSNNPHEIMDDEGFDWEAAAREIDVVCQMTSDAKGKVYEKRKQQSTLDKFVSVAIAKKETPPPQFPEDDQSPTFVHPIDVEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVREQQTVQAVIDNLHISRLEYRSETDHDVISYVHNRKIELIQRSLLQYYQVAMGPEAVEINNKFMEVIRPIVARLTNIGVIQNRDYRTLSPCQLLEIREKFRQRLRQDLSHVNCEDVEGYFGVLITLYYIHKLLSSHGIRPACEMLERKLKQGYFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALGDIGEIVKATEFIGQSSGKAMKGQSQKVQQAVLKVCILFGTRFILLPCTYMVHQQKFRTGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYVELSIEKFIPRQKNVKDDELHISPSKDKLTVSEIELLETYFHPTGENNCRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLVSIPEDDKIYSLQEDLCLGHSKPVTTTKLDEAKKDNESCSRHKIQKNVASVNCLELDSYHLGIQSKDFVDLTLQDGTFCDLGKNQVEACEGDETIPETPIAKRSLSNEGDNAGQMVNLVEIETSSLVADACIDGMRDEELSPRLTNLIRSGVVPESPVDERGKLRYNSVIRDCMLPVLPHKEQDASSLRSRVTKEVILDRGTDKNVCTSAINETKSPLLDLKNCAIRRGRVFLSQTEEGHTHKTDPSFSEEALPTACGEMSESIKPARKFKRLRKAEDTESNMNQKNNKLFASTAIFLKSTSASHPAQYKHGQGKRKSTHNVRDFIEEEAEVSSDAYVSNDEDDEDGNSFDSFIDDRTNPTAASQPEASRIDMMAIYRRSLLSQTPSNGGLDFSATFTPDRLTMAVRISESGDSSGKTVNHFNTEPTKLSANRTLESVSIDQITSEAMPLTCSPTGTGTETRSRKRRLTFYHSGHFPNVNLEREFALQSKKVVDADATTDVLCDDQFYNDLDLDELEAQATLLLKQKLDLTIQKQDTVPQSHTSNLDIFQSPSFDLGI 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0004 1221 MobiDBLite consensus disorder prediction 997 1013 - -
Aed5g0004 1221 CDD DEXDc_FANCM 93 254 IPR044749 GO:0005524
Aed5g0004 1221 CDD FANCM_ID 290 404 - -
Aed5g0004 1221 SMART helicmild6 477 561 IPR001650 -
Aed5g0004 1221 PANTHER FANCONI ANEMIA GROUP M PROTEIN 510 1186 IPR039686 GO:0006281|GO:0043138
Aed5g0004 1221 PANTHER FANCONI ANEMIA GROUP M PROTEIN 14 489 IPR039686 GO:0006281|GO:0043138
Aed5g0004 1221 Gene3D - 91 265 IPR027417 -
Aed5g0004 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 603 IPR001650 -
Aed5g0004 1221 SMART ultradead3 91 271 IPR014001 -
Aed5g0004 1221 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 510 1186 - -
Aed5g0004 1221 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 14 489 - -
Aed5g0004 1221 Coils Coil 1176 1196 - -
Aed5g0004 1221 Pfam Type III restriction enzyme, res subunit 108 234 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aed5g0004 1221 CDD SF2_C_FANCM_Hef 414 565 - -
Aed5g0004 1221 Gene3D - 403 586 IPR027417 -
Aed5g0004 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 565 IPR027417 -
Aed5g0004 1221 MobiDBLite consensus disorder prediction 992 1030 - -
Aed5g0004 1221 Pfam Helicase conserved C-terminal domain 424 560 IPR001650 -
Aed5g0004 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 252 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0004 Aed-Chr5 50624 62150 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0004 K10896 - gmx:100820078 1793.86