Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2432 ATGAAGAACTATGGGAAGAAACGCTATGCGTATTGTGTACCTTCACGCTATAATGAACGCAGTGGTGCGTGCGTGCGAGGGTTCAGTTCTAGTAATGGGAGCCGAAGCTTCACGACGCTGAACCAAGTGGTGGAGGAGCTCCAGGCCAAGCTCGGCCATGACCTCAGTCACAAGCTCGACTTCATCACTGCGCAGATCAATCTCCTCTTCGGATCCCGACAACAACCGCATCCTCCTCCGCCGCCGAGGCAGTTACACCACCAACAACAAAAGGACCATTTTGCCCCTCCGCAAAACCCTACTTTCCACCCTGCCCCTGTCAGTTCCGCCTTTCAGCCTCTGATCTTCTCTTCTTCTAACGGCGTTGTCGCAGCTGCTTCGCACAATGAAGCTCCTTCTGCTCCTGCTCCTGTTGTTGAAGGCAACGAGGCTCCCAAGCAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGCGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCAGCCAACATTGTCTAGGACTGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTCCAAGATCCCAGCAACAAAAGGAAAATAATATGCAATGACGAGCTGCGTGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAAATGAATAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAACAACCTGCTCCAAAGAAACAGAAGGTAGACGTGGAGTCAGGAACAAAAAGCGCTGAACCTACTCCCTCTGTAATAATATCTGATGCACTTGCTAACTTTTTTGGCATTACCGGAAGGGAGATGCTGCAGTCTGAGGTTCTGAGACGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGTGTGTGATGCAAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGACAATGGGGATACCTGAAGTTCTGGGCCGTCACCATATTTTTAGGAGTTCATGATGCTGACAGCATTCTATGTGACAGATTGCATGGTGTTAATTCCAGTATAGTTGGAGCTGATCTTGACCACGTGTTGATAAGGTTCTGTAATTTGACTGATCAGATTTGTGTTATTAGTTCTTGTTGA 1137 0.4732 MKNYGKKRYAYCVPSRYNERSGACVRGFSSSNGSRSFTTLNQVVEELQAKLGHDLSHKLDFITAQINLLFGSRQQPHPPPPPRQLHHQQQKDHFAPPQNPTFHPAPVSSAFQPLIFSSSNGVVAAASHNEAPSAPAPVVEGNEAPKQSTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPTLSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKQPAPKKQKVDVESGTKSAEPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLECVMQSFRRSLAVKAFRQWGYLKFWAVTIFLGVHDADSILCDRLHGVNSSIVGADLDHVLIRFCNLTDQICVISSC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2432 378 MobiDBLite consensus disorder prediction 127 162 - -
Aed4g2432 378 ProSiteProfiles SWIB/MDM2 domain profile. 161 238 IPR003121 -
Aed4g2432 378 Pfam DEK C terminal domain 38 70 IPR014876 -
Aed4g2432 378 SMART swib_2 162 241 IPR019835 -
Aed4g2432 378 CDD SWIB-MDM2_like 166 236 - -
Aed4g2432 378 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 115 308 - -
Aed4g2432 378 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 36 90 - -
Aed4g2432 378 MobiDBLite consensus disorder prediction 71 99 - -
Aed4g2432 378 SUPERFAMILY SWIB/MDM2 domain 256 302 IPR036885 -
Aed4g2432 378 Pfam SWIB/MDM2 domain 166 236 IPR003121 -
Aed4g2432 378 SUPERFAMILY SWIB/MDM2 domain 155 242 IPR036885 -
Aed4g2432 378 Gene3D SWIB/MDM2 domain 257 317 IPR036885 -
Aed4g2432 378 Gene3D SWIB/MDM2 domain 157 246 IPR036885 -
Aed4g2432 378 CDD SWIB-MDM2_like 267 302 - -
Aed4g2432 378 MobiDBLite consensus disorder prediction 243 263 - -
Aed4g2432 378 PANTHER - 115 308 - -
Aed4g2432 378 PANTHER - 36 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2432 Aed-Chr4 26542594 26547057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed4g2432 SWIB 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2432 K15223 - gmx:100801960 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2432 4 26542594 26547057 Aed4g2432 4 26542594 26547057 ECH