Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2356 ATGTCGGACGAAGACGAATCTATGTCGGAACAGAGCAATGAATCAGGACTTGATTTCATCATGAGCTTGGACGATGTTCCAACAAAGCTCCCTCCACACCTCGAACTTTTCAAAACACGTGTTCTTTGCAACAACGATGCTCCTGTGCATACAGATACCATTCAATATTCTGGTGCTTATGCAACTTTGGGAGTTGATAATAGTGTGAGGTTGGATAGCTTCTGTGAAAACTTCAAGGTTGAAGTGAAGCGGCTTACGGATAGTGACATTGAGTTTGATATGATTGGTATTGACCCATCAATTGCCAATGCATTTCGAAGAATCCTTATATCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATCGCCAACAATACATCAATTGTACAAGATGAAGTTCTATCCCATAGATTGGGTCTTGTTCCAATTTCTGCTGATCCCAGGCTATTTGAATATCCAGAAAATGCGGGAGATGACAAGAATGAAAAGAACACCATTGTCTTCAAGCTGCATGTTCGTTGTCAAAAGGGTCAACCCCGTATTACTGTGAAATCAGATCAATTAAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGTCAAACCAAATGCAGGTTCAAAACCAAAAACATTTACATCTTTTACTTCCAGCCAAGATTCACTTCCTGAATTTTCCAACAATCCACTTGGTCTTACATATTCGGATATTATATTGGCTAAACTTGGACCTGGTCAGGTTGTACTCTTGGAAGACGTTGAGGATGAGCTAGCTGAAGAATTAAAAAATAAGTGCCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAAAAGAAGAGCAAAAGTAGCCAGACCACGGGATTGCACTTTGTGTAGGGAATGTATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCACTACGTCGTGTTAAAAATCATTTCATTTTTACTATTGAATCAACTGGAGCATTGCCCCCTGAAGAGCTATTTACTGAAGCTGTGAAGATTTTGGAAGACAAATGTGAACGTGTGATTACTGAGCTTTCTTGA 1062 0.3983 MSDEDESMSEQSNESGLDFIMSLDDVPTKLPPHLELFKTRVLCNNDAPVHTDTIQYSGAYATLGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPSIANAFRRILISEVPTMAIERVYIANNTSIVQDEVLSHRLGLVPISADPRLFEYPENAGDDKNEKNTIVFKLHVRCQKGQPRITVKSDQLKWLPNGSELPCEDVKPNAGSKPKTFTSFTSSQDSLPEFSNNPLGLTYSDIILAKLGPGQVVLLEDVEDELAEELKNKCPVNVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEELFTEAVKILEDKCERVITELS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2356 353 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 114 252 IPR036643 -
Aed4g2356 353 SUPERFAMILY RBP11-like subunits of RNA polymerase 76 352 IPR036603 GO:0006351|GO:0046983
Aed4g2356 353 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 91 345 IPR011263 GO:0003899|GO:0006351
Aed4g2356 353 PANTHER DNA-DIRECTED RNA POLYMERASE 18 253 - -
Aed4g2356 353 PANTHER BNAA01G22480D PROTEIN 249 353 - -
Aed4g2356 353 Pfam RNA polymerase Rpb3/RpoA insert domain 121 250 IPR011262 GO:0003899|GO:0006351|GO:0046983
Aed4g2356 353 PANTHER DNA-DIRECTED RNA POLYMERASE 249 353 - -
Aed4g2356 353 Gene3D - 253 353 IPR036603 GO:0006351|GO:0046983
Aed4g2356 353 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 103 143 IPR001514 GO:0003677|GO:0003899|GO:0006351
Aed4g2356 353 CDD RNAP_I_II_AC40 78 351 IPR033901 GO:0001054|GO:0001056
Aed4g2356 353 Gene3D - 115 252 IPR036643 -
Aed4g2356 353 PANTHER BNAA01G22480D PROTEIN 18 253 - -
Aed4g2356 353 SMART rpoldneu2 89 351 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2356 Aed-Chr4 25958142 25962347 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2356 K03027 - gmx:100818494 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2356 4 25958142 25962347 Aed4g2356 4 25958142 25962347 ECH