Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1814 ATGGCTTTGCCGAATCAGCAAACCGTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTCACCGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAGGTTCACCCGTTGGATTTTTCACAAACTGTGGAAAGCTTCGCTTCTATTGTTGGGATACTGCTGGGCAAGAGAAGTTTGGTGGCCTCAGAGATGGATACTATGTATATGGGGATGGCTGGTTGGGATATTATCCATGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGGCTAACATACAAAAATGTCCCTACCTGGCACCGTGATCTTTGCCGGGTCTGTGAAAACATTCCAATTGTTCTTTGCGGTAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACATTTCACAGGAAGAAGAACTTGCAGTACTATGAGATATCAGCTAAGAGCAACTACAACTTTGAAAAGCCTTTCCTGTATTTGGCCAGGAAACTTGCAGGTGATCCTAACTTGCACTTCGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAACAACAGCATGAGGCTGAACTTGCTGCAGCTGCTAGTCAGCCCCTTCCTGACGACGACGATGATACATTTGAGTAG 693 0.4632 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFSQTVESFASIVGILLGKRSLVASEMDTMYMGMAGWDIIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1814 230 Pfam Ras family 15 180 IPR001806 GO:0003924|GO:0005525
Aed4g1814 230 ProSiteProfiles small GTPase Ras family profile. 5 214 IPR001806 GO:0003924|GO:0005525
Aed4g1814 230 PANTHER RAN GTPASE 1 230 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 SMART ran_sub_2 19 229 - -
Aed4g1814 230 ProSiteProfiles small GTPase Ran family profile. 7 180 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 230 - -
Aed4g1814 230 MobiDBLite consensus disorder prediction 208 230 - -
Aed4g1814 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 203 IPR027417 -
Aed4g1814 230 Gene3D - 4 228 IPR027417 -
Aed4g1814 230 SMART rab_sub_5 14 183 - -
Aed4g1814 230 CDD Ran 14 188 - -
Aed4g1814 230 SMART rho_sub_3 16 179 IPR001806 GO:0003924|GO:0005525
Aed4g1814 230 SMART ras_sub_4 11 183 - -
Aed4g1814 230 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 177 199 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 139 157 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 103 124 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 83 101 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aed4g1814 230 ProSiteProfiles small GTPase Rab1 family profile. 8 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1814 Aed-Chr4 22371154 22373587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1814 K07936 - pvy:116115705 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1814 4 22371154 22373587 Aed4g1814 4 22371154 22373587 ECH