Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1800 ATGGACTTAGAAGGAAGTGAAAAGGATTCAGTGGTTACTCAGATTAGCATCGGTGGATTTGACAGTGAGGTCAAAGCAAGTGATCTCATGAATTACTTGGAGGATAAAATTGGACTTGTATACAGGTGTAGGTTGAAGACTTCTTGGACCCCTCCAGAGTCATATCCAGAATTTAATGTCATTGATACTGCAAAGATTAAAAGAACGGATGACTATAAGAAGGTGGAGCCCCATGCCTTTGTGCATTTTGCATCTCCGGAATCTGTGACTGCAGCCCTGAATGCTTCAGGTTGTTGTGATCTATTTTTGAAGAATCAACCTCTAAAGGTCAGCTGTGGGCCCGAAAATCCATACTTCCTGAACCAAAGGAGGAGAACTACAATTCCTTTTAAGATGTCTGATGTACTTGTTGAAATTGGGACTTTGGTTAGCCCAGGGGAGTTCTCTGTTGCTTGGAGAGGACCTGATAAAGGTGTAAAATTTCTTGTGGATCCTTTTGATGGCATGTGCAGGTTTTGTTTCAGTAGAGATACCGCATTCTCATTCAAAGGAATAGAAAAAAAAGCAGTGATAAAGTGTGATTTTCAGGTGGGATTCCTGGTTAGAGACATTAATGAGATTAGGAGATATAATGATACATCATATCTTGTTGTTTTATTACACCTAGCTTCTTCACCTTGGGTTTGGTACAGAACTGCTGATGATGACATTGGAGAATCAGTACCCTTTGATTTGCTGGATGATGATGATCCTTGGATTAGAACCACTGATTTTACTCCTAATGGGGCAATTGGTCGATGCAATTTTTATAGAATTTCAATCCCACCTCGCCATGGTGCGAAATTGATGAAGGCCATGCTTTATCTGAAAGGTCAAAGAGTGAAAATGCAAGAACTTCCACTTAAACAGACACTTAGGGCACTGAATGAACCTGATTTTGGAGTGCCCATGTTGGATGCTTTCTTCTCTGTACATTTTCAAAAGGACATTGCTTTTGACATAATGTTTTTGGTCAATGCTATTGTACATAAAGGCATATTCAATCAGCACAGGTTGTCGGATAAGTTTTTTGAATTGCTGAGAAATCAATCCAATGAGCTCAATGTGGCTGCCCTGAAGCATATATGTTCTTACAAGCACCCAGTATTTGATGCAACCAAGAGGCTAAAAATAGTCCAAGAATGGTTGCTCAGAAATCCAAAACTTTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGAAGATTGGTTATTACTCCATCAAAAGCCTATTGTATACCGCCTGAAGTTGAATTATCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGAGTCACCTTTATGGATGAAGGTATGCAGACAATTAATGTGAATGCTCTTAACTACTATGTTGCTCCTATAGTAAAGGAAATCACATCAAACTCTTTCCCTCAAAAGACAAAAATATATAAAAGGGTGAAGACTATCTTGGAAGAGGGATTTTACTTTTGTGGCCGAAAATATTCATTTTTAGCCTTTTCATCCAATCAACTTAGAGATAGATCTGCTTGGTTTTTTGCTGAATCTAAAATAAGATGTGATGATATACGAAATTGGATGGGAAAGTTTAATCAGAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACTTATGCAACAATTGAAGTTGCTGCAAATGAAGTTAACTCCATGCTACCTGATGTTGAGAGGAACAATTACATTTTCTCTGACGGTATTGGTATTATCACTCCTGATCTTGCAAGGGAAGTTGCAGAAAAATTGAAATTGGACAATGTACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTTGTAGCCTCTTGGCCTGCTAAAGGGGATGGGGTCAGACTTTCTTTGAGGCCTAGTATGAACAAGTTTCAATCTACTCATAATGTATTGGAGATCTGTACTTGGACCAGGTTTCAGCCAGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCACTGGTTGTGCCTGATGAAATATTTTGGCAAATGCAGGAGGCAATGCTTTTGAAGTTAAATCAAATGCTTGTGGATGCAGATATCGCTTTTGATGTTCTTACCAAATCATGTGCTGAGCATGGGAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCTAACAGAACCTCATCTTAGAGGTATGTTAACTTCTACACGTGCTGCACAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTCGGGCGTGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCCTCTCTTGAAAATTGTTTCTCAAAGCATGGCTCAAGATTTTCAGAGACAAAGAACCTGCATGTAGTAAAAGGTTTTGTGGTTATAGCCAAAAATCCTTGTCTTCATCCAGGAGATGTAAGAGTTTTGGAGGCAGTTGATGCCCCCGATTTACATCATTTAAATGATTGTCTTGTTTTCCCTCAAAACGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTCGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTCATTCCACCAAGTAAGAGGAGCTGGATACCTATGGAGTATGCCCCTCAAGAAAGCAAACTTATGACACGTCAAGTCATGACCCGAGACATCATAGATTTTTTTGTCAGAAACATGGTAAATGAACAGTTGGGTGCAATCTGCAATGCACACGTGGTACATGCTGATTCCAGTGACTATGGTGCCTTGGATGAGAAATGCATACACTTGGCTGAGCTAGCAGCCACTGCTGTAGATTTTCCAAAGACTGGGAAGCTTGTCACTATGCCTCCTCGTCTGAAACCAAAACTGTACCCTGATTTCATGGGGAAAGAGCGGCACCAGTCTTACAGGTCAAAGAAAATCCTGGGTAGACTTTACCGGCGTATCAAAGATGCTTACAATGAAGATATTGATGCACCCTATTTAAACTTCGTGACGGGTGATATACCATATGATAAAGATCTTGATGTTCCAGGATCTTCCGATTTTATTGCTGATGCGTGGGAGCAAAAATGCTCATATGACGGCCAGTTGAGTGGGCTACTTGGTCAATACAAAGTGAAAAGAGAAGAGGAAGTTGTTACTGGACAGATCTGGTCCATGCCAAAATACAACAGTAGGAAGCAGGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCCCTGAAAAAAGAATTTAGGCACATTTTTGAGAAACTGAATCCAGATGCTGGAGAATTAAGCGAGGAAGAAAAAAATTTGTTGTATGAGCAGAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCAGAATGGGTGAAAAAATCCCTTGCTCTGCAAGATAAATCCTCAGAGAACCAAGAGGCTGATAGTTTGGGAAGTACAGTGATGCTTAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCCCAAAGATAAGGCAACGGCATCAGAAATGTGGAAAGTTTGATTCAACCAAGCCAGTTGATTCTCTAGCAAAGTATCTGTCTGAAAGGTTATAA 3615 0.4055 MDLEGSEKDSVVTQISIGGFDSEVKASDLMNYLEDKIGLVYRCRLKTSWTPPESYPEFNVIDTAKIKRTDDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRTTIPFKMSDVLVEIGTLVSPGEFSVAWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIEKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIGESVPFDLLDDDDPWIRTTDFTPNGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVKMQELPLKQTLRALNEPDFGVPMLDAFFSVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDKFFELLRNQSNELNVAALKHICSYKHPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFPQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAESKIRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATIEVAANEVNSMLPDVERNNYIFSDGIGIITPDLAREVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNVLEICTWTRFQPGFLNRQIITLLSALVVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLMTRQVMTRDIIDFFVRNMVNEQLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPRLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYNEDIDAPYLNFVTGDIPYDKDLDVPGSSDFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHIFEKLNPDAGELSEEEKNLLYEQKASAWYQVTYHPEWVKKSLALQDKSSENQEADSLGSTVMLSFPWIAVDYLARPKIRQRHQKCGKFDSTKPVDSLAKYLSERL 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1800 1204 CDD RRM_SF 15 111 - -
Aed4g1800 1204 Pfam RNA dependent RNA polymerase 420 999 IPR007855 GO:0003968
Aed4g1800 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1203 - -
Aed4g1800 1204 SUPERFAMILY RNA-binding domain, RBD 7 117 IPR035979 GO:0003676
Aed4g1800 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1203 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1800 Aed-Chr4 22244471 22251330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1800 K11699 - gmx:100795178 2363.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1800 4 22244471 22251330 Aed4g1800 4 22244471 22251330 ECH