Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1746 ATGGCAACCAGAAGAACTCCGACGCTAACCAAATCCGTATTCGCCGCCGTAACCTCTTCTACAGCCTCTCGCTCCCGCTCCGCGAGACGACTCTTCTCCGCCATCCCTCGCGCTTCGGAGAATTCCATTTCTCGGTCTCAGATTATCGACGCATTCGCAGCAACCAATGTCGCCTCCGCCAAGTTCCTCTCTCGCTCTTTCACTCGCAGCTTCCACGCCACTAATCCCTCCCTCCGCTCCGCCGCAAGCTCTCAGGTGGCACAGACAGAGTACACAGATATGGCATGGGAGGGGATTGTTGGTGCTGTTGATGCAGCGCGAGTTAGTAAACAACAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTTTTGGAGCAAAAGGATGGCTTAGCTAGAAGGATATTTACTAAGGCAGGACTCGACAACACATCCGTTCTACAGGCTACTGAAGATTTTATAGCTAAGCAACCTAAGGTTACAGGTGACACTAGTGGTCCTGTAATGGGCTCGAATCTTAGCTCCCTCTTGGACAATTCTCGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTAGAGCACCTTTTGCTAGCATTTCACACTGATAAGAGGTTTGGGCAGCAGTTGTTTAAGAATCTTCAGCTTAGCAAGGAAACTTTGAAGGATGCCGTACAAGCTGTTCGTGGAAGTCAAAGAGTGACAGATCAAAATCCGGAGGGGAAATATGAGGCATTGGACAAGTATGGAAATGATCTGACTGAACTAGCTAGGCGTGGCAAGCTTGATCCCGTTATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCTGTTATTATTGGTGAACCTGGTGTGGGCAAAACTGCAATTGCTGAAGGATTAGCTCAACGCATAGTGCGTGGTGATGTTCCAGAGCCATTGATGAATCGAAAGTTGATCTCCCTTGATATGGGTTCATTGCTGGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACCGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGAGCAACTACGTTGAATGAGTATAGAAAATATATTGAAAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCAGTCAACCCTCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAGCGCTACGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCTCTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATTACAGAACGCTTCTTACCCGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACAGAATTGGATGAGAAAGACAGGGCAATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTCGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCAGAACAATGGGACAATGAAAAAAGTTTTATGACTCGGATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAGGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAACTGACTTCCAAAAGTCTGGACAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACAGAGATTGTTAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTCTTGCTGGAACAGGTTCTTCACAAGAGAGTGGTTGGTCAGGATATTGCTGTAAAATCTGTGGCTGATGCAATTCGTCGTTCAAGGGCTGGATTGTCTGATCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCGACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTCAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGAGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGCGGTCAGCTAACTGAAGTGGTCAGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGTTCTCATTACATACTTGACACTCTTCGTAGTACACAAGATGATAAAACTGCAGTCTATGATCAGATGAAAATGCAAGTTGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAATCGCATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCAAAGAGATCAGCAAAATAGTGGAGCTCCAGATGGAGCGAGTGAAAAACAGGCTCAAGCAGAAAAAAATTGATCTTCATTACACAGAAGAAGCTGTTAAACTTCTTGGTGTACTGGGTTTTGATCCAAATTTTGGAGCTAGACCAGTTAAAAGAGTGATACAGCAATTGGTTGAGAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACTCAATCATTGTTGATGCTGATGTGACTCTATCAGGCAAAGAACGTTCTCCTCTAAATAAACTGCTTATTAAGAAGTTGGACAGGCCTGTTGCTGATGCCATGGTTGTCAATGATTAA 2928 0.4327 MATRRTPTLTKSVFAAVTSSTASRSRSARRLFSAIPRASENSISRSQIIDAFAATNVASAKFLSRSFTRSFHATNPSLRSAASSQVAQTEYTDMAWEGIVGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATEDFIAKQPKVTGDTSGPVMGSNLSSLLDNSRKYKKEMGDEYVSVEHLLLAFHTDKRFGQQLFKNLQLSKETLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEKDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDNEKSFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLTDFQKSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILDTLRSTQDDKTAVYDQMKMQVVELARQTFRPEFMNRIDEYIVFQPLDSKEISKIVELQMERVKNRLKQKKIDLHYTEEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVTLSGKERSPLNKLLIKKLDRPVADAMVVND 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1746 975 Gene3D - 428 633 IPR027417 -
Aed4g1746 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 634 IPR027417 -
Aed4g1746 975 PANTHER BNAC09G42450D PROTEIN 64 970 - -
Aed4g1746 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 942 IPR027417 -
Aed4g1746 975 SUPERFAMILY Double Clp-N motif 90 241 IPR036628 -
Aed4g1746 975 SMART ClpB_D2_small_2 861 955 IPR019489 -
Aed4g1746 975 Coils Coil 497 517 - -
Aed4g1746 975 PANTHER ATP-DEPENDENT CLP PROTEASE 64 970 - -
Aed4g1746 975 Coils Coil 584 618 - -
Aed4g1746 975 CDD AAA 660 816 - -
Aed4g1746 975 Gene3D - 638 859 IPR027417 -
Aed4g1746 975 Pfam AAA lid domain 427 529 IPR041546 -
Aed4g1746 975 ProSiteProfiles Clp repeat (R) domain profile. 86 231 IPR004176 -
Aed4g1746 975 Gene3D - 234 427 IPR027417 -
Aed4g1746 975 Coils Coil 519 546 - -
Aed4g1746 975 Pfam ATPase family associated with various cellular activities (AAA) 289 422 IPR003959 GO:0005524|GO:0016887
Aed4g1746 975 Pfam Clp amino terminal domain, pathogenicity island component 181 230 IPR004176 -
Aed4g1746 975 Pfam Clp amino terminal domain, pathogenicity island component 102 153 IPR004176 -
Aed4g1746 975 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 764 782 IPR001270 GO:0005524
Aed4g1746 975 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 735 753 IPR001270 GO:0005524
Aed4g1746 975 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 690 708 IPR001270 GO:0005524
Aed4g1746 975 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 797 811 IPR001270 GO:0005524
Aed4g1746 975 Pfam C-terminal, D2-small domain, of ClpB protein 861 941 IPR019489 -
Aed4g1746 975 Coils Coil 557 577 - -
Aed4g1746 975 CDD AAA 266 423 - -
Aed4g1746 975 SMART AAA_5 283 427 IPR003593 -
Aed4g1746 975 SMART AAA_5 686 828 IPR003593 -
Aed4g1746 975 ProSitePatterns Chaperonins clpA/B signature 1. 379 391 IPR018368 GO:0005524
Aed4g1746 975 Gene3D - 861 971 - -
Aed4g1746 975 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 92 944 IPR017730 GO:0005737|GO:0009408|GO:0042026
Aed4g1746 975 Pfam AAA domain (Cdc48 subfamily) 685 854 IPR003959 GO:0005524|GO:0016887
Aed4g1746 975 ProSitePatterns Chaperonins clpA/B signature 2. 720 738 IPR028299 -
Aed4g1746 975 Gene3D - 88 233 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1746 Aed-Chr4 21805401 21812355 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1746 K03695 - gmx:100782242 1781.53