Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1745 ATGGTTCATGCTGTTAGGTTAGGTGATGTGGTGAAAGACAAAACACACGGAATGATGATACGCATGTACGATGCAGGCGAACTGATGTTGCTGTCGAAGCACATTACAACCTTAGAATCCCTCGTCCGGTTCCACGCGGTGACGGTGACGAGTGGTTACTCCACGAACCTCTTCATAGCTTCAAAGCTTATATCTCTATACGACTCTCTCAACAACAACAACAATAGTTCATGTTCCACACTGTTCCACTCTCTTCCCTCCAAAGACAAAGACACGTTCATCTACAACTCCTTCCTCAAGTCTCTCTTCTCCCGCTCCCACTTCTCTCGCGTCCTCTCCATCTTCTCCCACATGCGCACTTCCAACCTCTCCCCCAACAGCTTCACCCTCCCCATCGTCGTCTCCGCCGCCGCGCACCTCACGCTCCTCCCCCACGGCGCGTCGCTCCACGCCCTCGCTTCAAAAACCGCCCTTTTACACTCTTCCTTCGTCTCGCTTTACTCGCGCTGTGGCCGAATGGACCTTGCACGCAAGGTGTTCGATGAAACTCCCGTTAGGGATGTGGTTGCTTGGACTGCACTCATCATCGGGCACGTCCACAATGGTGAATCCGAGAAGGCTTTGAGGTGTCTCCGTCACATGCATTGTGAAGAATCTCAGAAACCCAACGCTAGAACGTGGGAGGGTGGGTTCCTCGCGTGTGGGAACCTCGGTGCTGTGAACGAAGGCGCGTGTTTGCATGGGGTGGTTATAAAAACCGGAATTGATTCTTTTTATATACACTCTTCGGTTTTGGACATGTATTCCAAATGCGGGGTTCCACGAGAAGCGTATCGGTCTTTTTGTGAGGTGGTTCACAAAGATCTTCTGTGTTGGACGTCCATCATTGGGGTTTATGCGAGGTTTGGGATGATGGGGGAGTGTGTGAGGTTGTTTAGGGAAATGCAGGAAAATGAAATAAGCCCGGATGGGATTACTGTTGGTTGCATGCTTTCGGGGTTTGGTAATTCCATGGATGTGTCTCAAGGGAAAGCGTTTCATGGAGTCATTATAAGGAGACACTATGATGCGGATGATGAGAAAGTTAATGATTCGCTGCTTTTTATGTACTGCAAGTTTGGAATGTTAAGTTTGTCAGAGAGGATTTTCCTGTTGTGTCGAGGGAGCGGAGAGTGTTGGAACTTTATGGTTTTTGGGTATGGTAGAGTAGGGGAGAACGTGAAGTGTGTTGAGCTCTTCAGGGAAATGCAGTGTTTGGGTTTTCATTCTGAATCGATTGGTGTAGCATCAGTAATTGCCTCGTATGCCCAGTTAGGAGCAGTTGATTTGGGAAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAACAATAACATCTCAGTCACCAACTCACTCATAGAGATGTATGGAAAATGTGGTAAGATGACCTTTGCTTGGAGAATATTTAATACGTTGGAGAGGGATGTTGTGTCATGGAACACTCTGATTTCGTCTCATGTTCACATGAAGCTTCATGAAGAGGCTGTAAATTTATTTAATAGAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACGCTTGTGGTAGTGCTTTCAGCTTGTTCTCACCTTGCATCATTGGAGAGAGGAGAAAGAGTTCATCGCTACATAAAAGAAAGTGGTTTTACACTCAATTTACCTCTTGGCACGGCGTTGGTTGATATGTATGCTAAGTGTGGGCAGCTGCAGAAATCAAGAATGGTATTTGACTCTATGATCGAGAAGGATGTAGTTTGCTGGAATGCAATGATTTCAGGCTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCAACATATGGAGGAATCAAATGTTGTTATGCCCAATGAAATTACCTTCCTCTCTCTTCTCTCAGCATGTGCCCATTCAGGGTTTGTTGAAGAAGGGAAATACGTGTTTGCCAGAATGAAGAGTTATTCTGTGAATCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTCAGGTAATGTACAAGAAGCAGAAGCTATGGTCCTATCCATGCCCATTTCTCCAGATGGTGGTGTTTGGGGAGCTTTGTTAGGTCATTGTAAAACTCACAATCAAATTGAGATGGGAATAAGAATTGCAAAGTATGCTATTGACTTTGAACCAGAAAACGATGGCTACTATATAGTGATGGCCAATATGTATAGCTCCATTGGGAGGTGGGAAGAAGCAGAAGATGTCAGAAGGACCATGAAAGAGAGGTGTTCAATGGGAAAGAAAGCTGGCTGGAGTCTGCTTTGA 2316 0.456 MVHAVRLGDVVKDKTHGMMIRMYDAGELMLLSKHITTLESLVRFHAVTVTSGYSTNLFIASKLISLYDSLNNNNNSSCSTLFHSLPSKDKDTFIYNSFLKSLFSRSHFSRVLSIFSHMRTSNLSPNSFTLPIVVSAAAHLTLLPHGASLHALASKTALLHSSFVSLYSRCGRMDLARKVFDETPVRDVVAWTALIIGHVHNGESEKALRCLRHMHCEESQKPNARTWEGGFLACGNLGAVNEGACLHGVVIKTGIDSFYIHSSVLDMYSKCGVPREAYRSFCEVVHKDLLCWTSIIGVYARFGMMGECVRLFREMQENEISPDGITVGCMLSGFGNSMDVSQGKAFHGVIIRRHYDADDEKVNDSLLFMYCKFGMLSLSERIFLLCRGSGECWNFMVFGYGRVGENVKCVELFREMQCLGFHSESIGVASVIASYAQLGAVDLGRSIHCNVIKGFLDGNNNISVTNSLIEMYGKCGKMTFAWRIFNTLERDVVSWNTLISSHVHMKLHEEAVNLFNRMVREDQKPNTATLVVVLSACSHLASLERGERVHRYIKESGFTLNLPLGTALVDMYAKCGQLQKSRMVFDSMIEKDVVCWNAMISGYGMNGYAESALEIFQHMEESNVVMPNEITFLSLLSACAHSGFVEEGKYVFARMKSYSVNPNLKHYTCMVDLLGRSGNVQEAEAMVLSMPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDFEPENDGYYIVMANMYSSIGRWEEAEDVRRTMKERCSMGKKAGWSLL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1745 771 Pfam PPR repeat family 490 538 IPR002885 -
Aed4g1745 771 Pfam PPR repeat family 591 640 IPR002885 -
Aed4g1745 771 Pfam PPR repeat family 288 334 IPR002885 -
Aed4g1745 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 220 540 - -
Aed4g1745 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 446 - -
Aed4g1745 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 429 770 - -
Aed4g1745 771 SUPERFAMILY TPR-like 571 751 IPR011990 GO:0005515
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 594 628 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 630 663 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 566 594 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 493 527 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 94 126 IPR002885 -
Aed4g1745 771 TIGRFAM PPR: pentatricopeptide repeat domain 189 223 IPR002885 -
Aed4g1745 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Aed4g1745 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 256 346 IPR011990 GO:0005515
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 149 244 IPR011990 GO:0005515
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 28 144 IPR011990 GO:0005515
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 358 460 IPR011990 GO:0005515
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 626 769 IPR011990 GO:0005515
Aed4g1745 771 Gene3D Tetratricopeptide repeat domain 505 625 IPR011990 GO:0005515
Aed4g1745 771 Pfam E motif 709 767 IPR046848 -
Aed4g1745 771 Pfam PPR repeat 161 182 IPR002885 -
Aed4g1745 771 Pfam PPR repeat 666 690 IPR002885 -
Aed4g1745 771 Pfam PPR repeat 189 215 IPR002885 -
Aed4g1745 771 Pfam PPR repeat 392 421 IPR002885 -
Aed4g1745 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 628 662 IPR002885 -
Aed4g1745 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Aed4g1745 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1745 Aed-Chr4 21802634 21804949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1745 157 771 Glycoside Hydrolase AT3G49170 30.635 8.49e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1745 - - gmx:100780090 1310.05