Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1709 ATGAATGAATCATTACTTGCAGCTGCGCAAGTTGGGGACATAGACTTACTCTACAAACTGATTCAGATGCAACCCTATGTATTGGAGCACACAGATTTCATGCCATTTGTTGACACTCCTTTGCATGTAGCAGCAGCTGCCGGGCACGCAAGTTTCGCCACTGAGATGATGAGACTGAAACCTTCGTTTGCTTGGAAGCTGAACCAGCGTGGCCTCAGCCCCATGCACCTTGCCTTGCACAACAAGCATTACAGAACGGTGTGTCGCTTTGTGGGCATCAACAAGGACCTTGTAAGAGTGAAAGGGAGGGAGGGTCTCACTCCTTTGCATGTTGCAACTCAGACTGGGAGAATTGATCTTGTGGCTAGGTTCTTGTCGGCTTGCCCTGGTTCCATTGAAGATGTTACTGTTCGAAGTGAGACTGCGTTGCATGTTGCTGTTAAATGTAATCAGTTTCTGGCTTTGGAGGTTTTGGTTGGATGGCTTCAGAAAAACTGCCAAAGACATGCCCATGACCGCCAAAAAAGGGTTTTAAATTGGCAGGATGAAGCCGGCAACACCGTTCTCCACCTTTCAGCAGTTAGGTTGTTGATAGAGAGCAACATAGACAAAAATGCGAAGAATTTTGAGGAGTCAACAGCGTTGGACATAGTGGAGATTAATGAGAGTCAGACTCACAGCGCAGAGATCAGAGACATGTTAGTTAGAGGAGGAGTTTCTCGTGGTTTTTCGCTAACTACTGTTCCACTCCTCGAAGAAGAGCTAAGAGCAAAAATCACATTCAACGAGAAAATAGCAATCTTCGTTACTCGCCTCAGAAAACGAATATCAAGCGACACACGCAATGCTTTGTTGGTGGTCGCTATTCTCTTCGCAACAAGCACGTACGAAGCAGCACTTACTCCCCCTGGCGGAGTTTACCAAGGTGCAGGGGGTAGTAGTGTCACAACAACCTCTAAGAAAAGCAACGCTTCTTCACTGCATAAGAGTGATTACGCAGCAACGCCTGAAATAATTGGGAAAGTGGTGATGAAAATGCAAAGCTTCATATGGTTCTGGTCGTTCAACACGTGGTCCTTTTATCTATCGGTTTTGATGATATGTTTGCTGATGCCACGAGGGCGAATAAGCTTGATCGTGACATTACCGCTTTTGATATTTTCTGGGTGCTACGTCTTCTCCATGTTGGTGATATCACCCAGCCTCAGGTTGAACACCGCCACTGTGGTCATGCCATGCATATTCATCGTGTTGTACTGTTGGGGAAGTTTCGTATACATTAGGTTGGCCAAAAAACTTAAAATGTACGGTCATAAACAGAAAGACACATTCAAGTTTTCTGGAGGAAACATATGGTAA 1359 0.4547 MNESLLAAAQVGDIDLLYKLIQMQPYVLEHTDFMPFVDTPLHVAAAAGHASFATEMMRLKPSFAWKLNQRGLSPMHLALHNKHYRTVCRFVGINKDLVRVKGREGLTPLHVATQTGRIDLVARFLSACPGSIEDVTVRSETALHVAVKCNQFLALEVLVGWLQKNCQRHAHDRQKRVLNWQDEAGNTVLHLSAVRLLIESNIDKNAKNFEESTALDIVEINESQTHSAEIRDMLVRGGVSRGFSLTTVPLLEEELRAKITFNEKIAIFVTRLRKRISSDTRNALLVVAILFATSTYEAALTPPGGVYQGAGGSSVTTTSKKSNASSLHKSDYAATPEIIGKVVMKMQSFIWFWSFNTWSFYLSVLMICLLMPRGRISLIVTLPLLIFSGCYVFSMLVISPSLRLNTATVVMPCIFIVLYCWGSFVYIRLAKKLKMYGHKQKDTFKFSGGNIW 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1709 452 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Aed4g1709 452 SUPERFAMILY Ankyrin repeat 5 223 IPR036770 -
Aed4g1709 452 PANTHER HOMEOBOX PROTEIN WARIAI 10 418 - -
Aed4g1709 452 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Aed4g1709 452 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Aed4g1709 452 SMART ANK_2a 184 206 IPR002110 GO:0005515
Aed4g1709 452 SMART ANK_2a 104 134 IPR002110 GO:0005515
Aed4g1709 452 SMART ANK_2a 36 65 IPR002110 GO:0005515
Aed4g1709 452 SMART ANK_2a 138 170 IPR002110 GO:0005515
Aed4g1709 452 SMART ANK_2a 70 99 IPR002110 GO:0005515
Aed4g1709 452 Gene3D - 1 230 IPR036770 -
Aed4g1709 452 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Aed4g1709 452 PANTHER ANKYRIN REPEAT PROTEIN 10 418 - -
Aed4g1709 452 Pfam Domain of unknown function 278 373 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1709 Aed-Chr4 21538726 21540375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1709 4 426 Miscellaneous Gene Families AT5G15500 39.908 2.59e-90 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1709 - - gmx:100790227 734.561