Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1707 ATGCTTGTCTCGTCATCATCATGGGATCTCAAATGGCTCCTCCAATTCGTAGTCTCAACCTTCGTCTTTGCGATGGGACTGCACGCCTTGCTCAAGAACACTGCCTCCAAGTACTTCCAGCTTCACGCCAATGATATGGACCAGGAGATTCAGAGCAGCGCCACCACTGCATCTTCTTCTTCAACTTCCCTCATTCCTCACTCTGGAACATCCACCTCTCTCAACCACCCTACTACAACTCTAACTCTAACTGTTCTCTTTCCTTATGATGAATTTCTCAATTTGTTTAACTGGGACAAACCAGGATTTCCTCCTTCTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCCTTCACAAGGCCGCTTATTGCCTATCTATTGGACAAGGGTCACCGCAGAGAATGTAATGTCACAGATTTTATACCTTTTTCAATTCTTGATTATTCCCTTGTACTTACCTTGCTTAGATGTGCCTCTTCAGGCTGCCATAATGATTGGTGCTTTCTGTGCGAATTTGAAGCCCATGTTGAAAAAGCAAGGCTAAGTTCTCAGGCGTTTTCTCCAATGAACATTCTCTCTCGTTTGCCCAATATCAGTGGCACACTGGGTTACGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTCGGTGGAGAAAAAATTGTCCCCCCTAAGCATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACTGAATGTGAGACAAATTCAAGTCAATATGAAAATATGATGGACTTGACCGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGATTATGTCAAGGCATGGAAACGACTCACAGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGCCCTTACATGAGTGAAGTTGGAGATGGGTCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGCCATTACATCTGCTACATCAAAGATTTCCGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTGCTCTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATCGAATCTTCAGAGACGGCAGAAGTGCAAACAGTCAAATCGGAGGTGCCGCCTGGCTCTACTGAACAAGCTGAATGCCTCTCTGATGTGAAAAATGAGACTTTCAGTGGAGGATGTAAGACTTTTTCTTCTGAAAGAAATCCAGAGTTGAAGGTTTCTGGCTGTGAAAACGTGTCTTTGACTGAAATGAACTCTGGAGTTAAAAGAGAGCTGTCTAAGGATGTGAACATTATTGATGTTGCTAATGAGTCTTTCTGTAATGGTGTTGAGTCATCATCTTATATGCATGATGATTCTGAATCTGTGAAAGATACGGGGGACATAGATTCGGACGGATCAAATACATGCTCATCCGTTTTAGAAGAGATTTCAGTCTACATGGAAGAGCGAGATGATAATGATAATGGTATGGCTGAATCGAGCCCTTCATGTTTGCCTAATGGCTTTTCTTGTGTTTCAGTGGATTATCAAAACACGAGGGAAGAAGATTCAGAACATGTAGATGTGATTAAATGCAAGTTAACATCAAATGGCTTTGCCAATTATAGCAATGGATATGCCAGTGCAAACAAATATGATGATATCCCAGTGGAAGATGGTGATGGTTCTTTTTCCACTGAAAATTCTGAAGTTGACACTGGAAATGGTGTTAAGAAAATGGAAATATCAGGGAGTAAGTTGGTAATTTAG 2031 0.4165 MLVSSSSWDLKWLLQFVVSTFVFAMGLHALLKNTASKYFQLHANDMDQEIQSSATTASSSSTSLIPHSGTSTSLNHPTTTLTLTVLFPYDEFLNLFNWDKPGFPPSGLLNCGNSCFANVVLQCLSFTRPLIAYLLDKGHRRECNVTDFIPFSILDYSLVLTLLRCASSGCHNDWCFLCEFEAHVEKARLSSQAFSPMNILSRLPNISGTLGYGRQEDAHEFMRFAIDAMQSVCLDEFGGEKIVPPKHQETTLIQHIFGGHLQSEVICTECETNSSQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIESSETAEVQTVKSEVPPGSTEQAECLSDVKNETFSGGCKTFSSERNPELKVSGCENVSLTEMNSGVKRELSKDVNIIDVANESFCNGVESSSYMHDDSESVKDTGDIDSDGSNTCSSVLEEISVYMEERDDNDNGMAESSPSCLPNGFSCVSVDYQNTREEDSEHVDVIKCKLTSNGFANYSNGYASANKYDDIPVEDGDGSFSTENSEVDTGNGVKKMEISGSKLVI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1707 676 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 106 438 IPR028889 -
Aed4g1707 676 Pfam Ubiquitin carboxyl-terminal hydrolase 107 435 IPR001394 GO:0004843|GO:0016579
Aed4g1707 676 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 89 147 - -
Aed4g1707 676 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 170 606 - -
Aed4g1707 676 SUPERFAMILY Cysteine proteinases 102 447 IPR038765 -
Aed4g1707 676 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 89 147 - -
Aed4g1707 676 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 170 606 - -
Aed4g1707 676 CDD Peptidase_C19E 105 436 - -
Aed4g1707 676 Gene3D Cysteine proteinases 102 447 - -
Aed4g1707 676 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 107 122 IPR018200 GO:0004843|GO:0006511
Aed4g1707 676 MobiDBLite consensus disorder prediction 538 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1707 Aed-Chr4 21524602 21529644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1707 85 491 Miscellaneous Gene Families AT4G31670 66.585 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1707 K11855 - gmx:100810577 994.956