Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1702 ATGATTTCCACAATGAGTTGGGAAGAGAACGATGAATTTGAATTTGAATTTGAGATCCCTCTTACTCAAACGGCAACGTCTTCTTTTCACGCGCTTGCATCCGTCGATGATAATCAACGGCCATCGAAGAAACCTACACGCAAAACGACGACGCTTCACGGCATTGGAAAGGAGAACATCCAACCCAGCGATGGTTGCGAATTTGAGAACTGCAGCTTGGATTTCATTCCTTCCACCTTAGATTGCGCTTCTGTTTGCAGTGTTCAACGGTTGGGAGAAGAGGACAGTGTTTTGTCTTCTCCTTCTTCTTCTTCTGCGTCGTTGTCGGAGCTGAAAACGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGGTTCAAGAACCGACGAACTTAACTGTGCAGATGCAGATTCTGATTCGGAGCTCGATCTGTTGATGAATTTGCGCGATGAGTTAGAGGCAGTAGATAGTTCCGTTCAGTGTCCCCTGTGTCAGGTTGATATTTCGAACTTGACTGAGGAGCAGCGACATCTTCATACCAATAATTGTCTTGACGAAACCGGTGAAGTTGCGGTTCCTGAAGACGTGAAGGGTGCTCAACATGTTCCAAAAGTTGCTTCTGTGGTTGATTGGCTACGCGGGCTCGGTTTGGAGAAGTATGAAGATGTTTTCGTTAGGGAGGAAGTTGATTGGGACACCTTGCAATGTCTCACAGAAGAGGATCTCTTAAAAATGGGTATTACTTCACTAGGGCCAAGAAAAAAGATTGTGCATGCCCTGTGTGAACTTAGAAAAGGAGATGCTGCTACAAATGAGAAACATGAGGATGCTTCGGCAGAGCCAAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAATCTGAAAGAAAAGTTGATGGCTCTGGACCTAGTAAACCCGTGGCTAACAAATTAATTACTGAATATTTTCCAGGATTTGTTACCAAAGAAAAGAAAGTTTCTGCCTCTCCCGGAGAACAACAGGAAATGAAAAACAGTTGCTTGGATTCTGGTCGTAAGCACAAATCAAAAAATACGCCAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGCGCTGTACAAGGAACACCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCATTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGGCTTGTAAATATGAACATTGGAATTCCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTGTTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCAGTGCTTCACACGGGTGATTTCCGCTTTAGTGAAGAGATGGCATTGAATCCTTTATTGCAGATATGTCCTATCAATATTCTAACTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTCGTTATTGATGCTATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCTTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTCATGTGACTGCGGCAAAGTTGCGTCTTTTAAAATGTTTGGAATTTAAGGAGGAGGATATGCACTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCACATATCTAGTCAATATACGGGTCAGTATAATCTTATAGTTGCTTTCTCCCCCACTGGTTGGACTTTCGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCTTACAGTGAGCATAGCAGCTTTACAGAACTAAAAGAGTTTGTAAAAGTTGTGTCTCCTGATAACATTATACCAAGTGTGAATAACGATGGACCCGAATCTTCTGATGCAATGATTTCTCTGTTGTTATCTTGA 2100 0.421 MISTMSWEENDEFEFEFEIPLTQTATSSFHALASVDDNQRPSKKPTRKTTTLHGIGKENIQPSDGCEFENCSLDFIPSTLDCASVCSVQRLGEEDSVLSSPSSSSASLSELKTKGNYLRNSIESKLVGSRTDELNCADADSDSELDLLMNLRDELEAVDSSVQCPLCQVDISNLTEEQRHLHTNNCLDETGEVAVPEDVKGAQHVPKVASVVDWLRGLGLEKYEDVFVREEVDWDTLQCLTEEDLLKMGITSLGPRKKIVHALCELRKGDAATNEKHEDASAEPRRIRNQKVKLKHDKSERKVDGSGPSKPVANKLITEYFPGFVTKEKKVSASPGEQQEMKNSCLDSGRKHKSKNTPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMALNPLLQICPINILTLDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRLLKCLEFKEEDMHWFTSNEHESNIHVAPMWTLASFKRLKHISSQYTGQYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKEFVKVVSPDNIIPSVNNDGPESSDAMISLLLS 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1702 699 SMART SAM_4 203 269 IPR001660 GO:0005515
Aed4g1702 699 Pfam DNA repair metallo-beta-lactamase 581 685 IPR011084 -
Aed4g1702 699 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 161 695 - -
Aed4g1702 699 SUPERFAMILY Metallo-hydrolase/oxidoreductase 377 681 IPR036866 -
Aed4g1702 699 MobiDBLite consensus disorder prediction 344 361 - -
Aed4g1702 699 MobiDBLite consensus disorder prediction 271 305 - -
Aed4g1702 699 ProSiteProfiles SAM domain profile. 206 269 IPR001660 GO:0005515
Aed4g1702 699 MobiDBLite consensus disorder prediction 271 310 - -
Aed4g1702 699 Gene3D - 199 273 IPR013761 -
Aed4g1702 699 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 161 695 - -
Aed4g1702 699 CDD SAM_superfamily 210 263 - -
Aed4g1702 699 MobiDBLite consensus disorder prediction 330 361 - -
Aed4g1702 699 SUPERFAMILY SAM/Pointed domain 207 268 IPR013761 -
Aed4g1702 699 Gene3D - 513 660 - -
Aed4g1702 699 CDD SNM1A-1C-like_MBL-fold 353 510 - -
Aed4g1702 699 Pfam SAM domain (Sterile alpha motif) 207 265 IPR001660 GO:0005515
Aed4g1702 699 Gene3D - 373 682 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1702 Aed-Chr4 21471904 21477653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1702 209 263 Glycosyltransferase AT3G07170 50.909 4.60e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1702 K15340 - gmx:100816321 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1702 4 21471904 21477653 Aed4g1702 4 21471904 21477653 ECH