Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1672 ATGGCTGCTCAGCCATTCCGAAAAGCCATAGCGAAACCTTCATCTTCCACACCTCTAAATCCAATTCCAAACCTTTCCCTCATAACTTCCATTACTTCAATCCTTCAAAACCTGAATCCCGAAAGGCCAGATTACTCACCCCTGAGAGAGTTCTCATCTCAGCTCAGCCCAAACTTGGTTATCGACGTGATGAAGAACCAAAAGAACCCCCAACACGCCCTTCACTTCTTCACCTGGTCCTCCAACCTCAACAACTACTCCCACACTCCCTTCTGCTACGCTGCCATCACCCATCTCTTGCTCTCTCACTCCCTCTTCTCCACTGCCTTCTCCCTCCTCCGCCACTCCAACAAACTCTCCGACAACCTCGTCTGCATATTCATCAACGCTCTCGGCCGCCGCGGCGACATCAGGGGTGCCATTCACTGGTTCCACAAAGCAAAAGCCTTAACCAGAGGACGCTGCGTGTGTTCCCTCAACGCTATATTGGGCGTCCTCGTCAGGGCCAACCGTGTCAGCATTGCCAAGGCCATCTACGACCAGGCTCTCTCGGAAGCTCTTGTGGTACCCGATGTTTACACTCACACCACCATGATCCGTGGGTTCTGCAAAGCGGGCATGATCGAGAGTGCAGGCAAGGTGTTCTACGAAATGCGCTGCGAACCCAACATGGTTACTTACAACACGTTGATCCACGGGTTCTGTAAAAGAGGTGACATGGATGGTGCAAGGAGGCTTTTTGACAGATTGGTGGAGTGCAAGAGTTGCCAGCCGGATGTGGTGAGTTTCACCACTCTGATTGATGGCTATTCGAAGAGAGGCAAATTCCAAGAGGCGCTGGAGTGCTTGAAGGAGATGGTGGAGCGAGGGTGTTCACCGAATGTCGTGACCTACAATGCTTTGATTGAAGGTCTTTGCTTGAGCGGTGAAGTGGACGAGGCCAGGAAGATGATGAGTAGGATGCGGTTGAATGGTTTGAAAGACAATGTGGCCACCAACACTAGCTTGTTGAAGGGGTTTTGCATTGTGGGAAAGTCTGATGAGGCTGTTAAGCATTTGGGGGAAATGATGGTTCGCGGGATGAAGATGAAGCCAGATGCAAAAGCGTACGGGGTTGTTGTCAATGAGTATTGCAAGATTAGAAAACCAAGTGAAGCAGTGTCGCTTATGAGGGAAATGGTGGCGAGGGGTGTTAGGCCAAGTGTGTCAAGTTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGAGTTCTTCTTTTGAAGCAGATGCCTAAGATGGGATGCTCGCCCAATTTCTTGTCTTATAGCATAGTTATATGTGGTCTTTGTAAAGTGAAGGGTTGGAATAATGGGATGCAGCAAGTTGAAGAGTTTGTTTCGGACATGCTTCAGAATGGACATAACATGGATGCAACTATGTATAACTGCTTACTTGTGGGATATTGTGAAGACGGGGATGAAGAAATGGCACTAAAGACGGTTTATGACATAATGCGCAAGAACTTTGTAATCAAACAAGACATTTTTTGCACTTTTGTGAAGGTGTTGTGTGCAAAGGGGAAATTGAAAGAGGCAGAGACAGTATTTGAGGAAATGTGCAGGAAAAATTGCACGGCTGAAGAGGGGGTTAATCCAGCACCGGATGTTTAG 1665 0.4817 MAAQPFRKAIAKPSSSTPLNPIPNLSLITSITSILQNLNPERPDYSPLREFSSQLSPNLVIDVMKNQKNPQHALHFFTWSSNLNNYSHTPFCYAAITHLLLSHSLFSTAFSLLRHSNKLSDNLVCIFINALGRRGDIRGAIHWFHKAKALTRGRCVCSLNAILGVLVRANRVSIAKAIYDQALSEALVVPDVYTHTTMIRGFCKAGMIESAGKVFYEMRCEPNMVTYNTLIHGFCKRGDMDGARRLFDRLVECKSCQPDVVSFTTLIDGYSKRGKFQEALECLKEMVERGCSPNVVTYNALIEGLCLSGEVDEARKMMSRMRLNGLKDNVATNTSLLKGFCIVGKSDEAVKHLGEMMVRGMKMKPDAKAYGVVVNEYCKIRKPSEAVSLMREMVARGVRPSVSSFNAVFRVLVDEGKIDEGVLLLKQMPKMGCSPNFLSYSIVICGLCKVKGWNNGMQQVEEFVSDMLQNGHNMDATMYNCLLVGYCEDGDEEMALKTVYDIMRKNFVIKQDIFCTFVKVLCAKGKLKEAETVFEEMCRKNCTAEEGVNPAPDV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1672 554 Gene3D Tetratricopeptide repeat domain 321 396 IPR011990 GO:0005515
Aed4g1672 554 Gene3D Tetratricopeptide repeat domain 252 320 IPR011990 GO:0005515
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Aed4g1672 554 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 25 541 - -
Aed4g1672 554 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 25 541 - -
Aed4g1672 554 Pfam PPR repeat family 155 204 IPR002885 -
Aed4g1672 554 Pfam PPR repeat family 400 449 IPR002885 -
Aed4g1672 554 Pfam PPR repeat family 258 306 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 221 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 225 260 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 478 508 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 513 542 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 404 436 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 296 326 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 193 221 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 261 295 IPR002885 -
Aed4g1672 554 TIGRFAM PPR: pentatricopeptide repeat domain 369 401 IPR002885 -
Aed4g1672 554 Pfam PPR repeat 334 360 IPR002885 -
Aed4g1672 554 Pfam PPR repeat 369 398 IPR002885 -
Aed4g1672 554 Pfam PPR repeat 478 506 IPR002885 -
Aed4g1672 554 Pfam PPR repeat 514 542 IPR002885 -
Aed4g1672 554 Pfam PPR repeat 219 249 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 258 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Aed4g1672 554 Gene3D Tetratricopeptide repeat domain 46 154 IPR011990 GO:0005515
Aed4g1672 554 Gene3D Tetratricopeptide repeat domain 155 251 IPR011990 GO:0005515
Aed4g1672 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Aed4g1672 554 SUPERFAMILY HCP-like 65 321 - -
Aed4g1672 554 Gene3D Tetratricopeptide repeat domain 413 550 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1672 Aed-Chr4 21252038 21253702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1672 161 548 Glycosyltransferase AT1G05670 31.969 3.62e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1672 - - gmx:100802054 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1672 4 21252038 21253702 Aed4g1672 4 21252038 21253702 ECH