Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1621 ATGGAAAACTTGCAGAAGATCAACGCAGGAAACCACTCTGAGAAGGGATGTGTTTCCAGTGAAGATGAAAGCATCATAGTAAACCCCGAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGTTGCAAGATAGCAATACATGATTCTATGGGAGGGGGGAAAATTATTCCAAAGACTGGTAAGTTCTTTGCATCTGCAACAGAACGTACACAAAGCTGGAACGGAATTCAGCAGGAGATCACTGCAAGAGTGCAACGCAAGCTTGCCTATGAGGTTACTGCTCTAGTTCGGATATTTGGAAACAATGTCACCACTTCTTATGTAAGGACTACTTTGTGGGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAAGGAAAGTTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCCCTCCAGGCACTGACATTCTTGTCAATAGTTTTGTCATAAAACATGCAGATAAAACACCACCTTCAACACCCCCGGATTGTGAGGGTGCTTCTTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCGAATGGAACCAATGGATGGTTTCCTCTTGGTAATTGTACTTTGGGCGTTGGAACTGGTTCACCGCATATAATTCCACCAATGGCAAGAGACTCTCTTGGGCCTCACGAATCCTTAAGTGGGCGTTACATCCTCGTAACCAATCGAACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAGATTGAAACTCTTTGTGACTTATCAAGTATCTGCTTGGGTCCGAATTGGTTCTGGATCAACTGGGCCTCAGAATGTAAATATTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGGGGACAAGTTGATGTTGCTGATGTCAGGTGGCATGAAATTGGTGGGTCATTTAGAATTGAAAAACAGCCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTTTGAACTTAATGGTTGCTGGACTTCAAATTTTCGCTGTTGATAGACGGGCAAGGTTTAAATATTTAAGGAGACAAACAGAAAAGATCCGTAAGAGGGATATTGTCCTAAAATTCTCTGGGCTGGACTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAAACAAATACAAAACGATTTTCCCATTGGATCGTGCATTAGTAGAACCAATATCGACAATGAAGATTTTGTTGACTTCTTTGTGAAACATTTCAACTGGGCTGTTTTTGGGAATGAGCTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTAAATTACAAAGATGCTGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACCAGAGGTCATTGTATCTTCTGGGATGTGGATGGCACTGTTCAGCAATGGATCAAATCACTGAATAAAACTGATTTAATGACAGCTGTCCAAAATCGCTTAAACGGCTTATTGAGTCGCTACAAGGGAAAGTTCAAGCACTATGATGTCAACAATGAAATGTTGCATGGTTCGTTTTATCAAGATAGACTAGGTAAGGATATAAGGGCAAACATGTTTAAGACAGCACACCAACTAGATCCATCTGCTACCCTTTTTGTGAATGACTATCATGTTGAAGATGGATGTGACACAAGATCATCACCAGAAAAGTACATTCAACAAATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGTGGAATAGGAATTCAGGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGTTTACCAATATGGTTCACTGAGCTTGATGTGTCTTCAACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTTAGAGAAGCATTTGCACACCCTGCAATAGATGGTGTTATGCTATGGGGATTTTGGGAGTTGTTTGAGAGCAGGGAAAATTCACACTTGGTGAATGCAGATGGGGAACTCAACCAAGCTGGGAAAAGATACCTTGCTCTTAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGTTGATGAGCAAGGGCAATTATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTGGAAGTTGTGACCTTAGCAAAGAAAGTTTCCAAGACATTCGTTGTTGACAAGGGTGACTCGCCACTCGTGGTATCAATCGATTTATAA 2220 0.4162 MENLQKINAGNHSEKGCVSSEDESIIVNPEFDDGLNNWSGRGCKIAIHDSMGGGKIIPKTGKFFASATERTQSWNGIQQEITARVQRKLAYEVTALVRIFGNNVTTSYVRTTLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNSFVIKHADKTPPSTPPDCEGASFGVNIIENSNLANGTNGWFPLGNCTLGVGTGSPHIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITERLKLFVTYQVSAWVRIGSGSTGPQNVNIALSVDNQWVNGGQVDVADVRWHEIGGSFRIEKQPSKVMVYIQGPASGLNLMVAGLQIFAVDRRARFKYLRRQTEKIRKRDIVLKFSGLDSIGNLGTLVRVKQIQNDFPIGSCISRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGTVQQWIKSLNKTDLMTAVQNRLNGLLSRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTRSSPEKYIQQILDLQEQGAPVGGIGIQGHIDSPVGPIVCSALDKMGTLGLPIWFTELDVSSTNEYVRADDLEVMLREAFAHPAIDGVMLWGFWELFESRENSHLVNADGELNQAGKRYLALKQEWLSHSHGYVDEQGQLFSFRGFSGTYNVEVVTLAKKVSKTFVVDKGDSPLVVSIDL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1621 739 SUPERFAMILY (Trans)glycosidases 389 689 IPR017853 -
Aed4g1621 739 Gene3D - 18 176 - -
Aed4g1621 739 Gene3D - 190 351 - -
Aed4g1621 739 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 386 681 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 SUPERFAMILY Galactose-binding domain-like 22 178 IPR008979 -
Aed4g1621 739 PANTHER GLYCOSYL HYDROLASE 12 739 IPR044846 GO:0004553|GO:0005975
Aed4g1621 739 Gene3D Glycosidases 386 692 - -
Aed4g1621 739 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 609 619 IPR031158 -
Aed4g1621 739 SMART glyco_10 432 682 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 SUPERFAMILY Galactose-binding domain-like 193 353 IPR008979 -
Aed4g1621 739 Pfam Glycosyl hydrolase family 10 394 652 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 Pfam Carbohydrate binding domain 24 160 IPR003305 GO:0016798
Aed4g1621 739 Pfam Carbohydrate binding domain 195 338 IPR003305 GO:0016798
Aed4g1621 739 PRINTS Glycosyl hydrolase family 10 signature 463 475 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 PRINTS Glycosyl hydrolase family 10 signature 545 556 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 PRINTS Glycosyl hydrolase family 10 signature 577 589 IPR001000 GO:0004553|GO:0005975
Aed4g1621 739 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 12 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1621 Aed-Chr4 20936309 20939330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1621 18 739 Glycoside Hydrolase AT1G58370 72.928 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1621 - - gmx:100784250 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1621 4 20936309 20939330 Aed4g1621 4 20936309 20939330 ECH